Sequence
atgc intronic sequence ATGC exonic sequenceCCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattatgctacatgcttgtctata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G875564_T03 (Zea mays), 5'ss of exon 4
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGG---AAAAGCGgtatgcatatctttatctcttactctctc-cctttgatataggt--gtacttgcattgt----tctttttggttatttctccttattatgctacatgcttgtctata---------------
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TCCAGTTTACTTTAACGAACCATTATCATCTCTTCAAAAATGCTTTGAGGACTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGCCTAAAGgtatttttcttgctacaaattcgcacttgataatcaattatttgagttagaaccttcactgtaaggtttattaagtagatttgactcgtgaaataattccgcagttattatgcttctgaattcag
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G875564_T01 (Zea mays), 5'ss of exon 5
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgatataggtgtacttgcattgt--tctttttggttatttctccttattatgctacatgcttgtctata-----
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TCCAGTTTACTTTAACGAACCATTATCATCTCTTCAAAAATGCTTTGAGGACTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGCCTAAAGgtat---ttttcttgctacaaattcgcac---ttgataatcaattatttgagttagaaccttcactgtaaggtttattaagtagatttgactcgtgaa-ataattcc
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G061099_T01 (Zea mays), 5'ss of exon 4
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgat-ataggtgtacttgc-attgttctttttggttatttctccttattatgctacatgcttgtctata
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TCCTGTTTACTTTAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTATTCTTATTTGTTGGATCGTGCATATGAATGTGGTTTAAGGgtatgtctgtttctctaccttcctgttttccttgacccatacattttcttttgaatgcgaatctggtccaaacatctacattgaattacttaaatctgct--
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G402653_T03 (Zea mays), 5'ss of exon 3
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattatgctacatgcttgtctata--
|| ||||| || ||||| ||| | |||||||||||||| || |||||||| |||||||| || || || ||||||| |||||| || ||||||||| |||| | | |||| |||| | | | || ||| | || || | | || | ||| | | | | || ||
TCCAGTTTACTTCAATGAACCACTCTCATCCCTTCAGAAGTGCTTTGAGGATTTGGAGTATTCATACCTCTTGGATCAGGCATATCAACATGGAAAAGTGgtaagatcacttttacatctttaacattgcacatgtccgaggaat--ttcatctgctttccatgagtgccatagattaatgaaatcatttccaatccatttt
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G409265_T01 (Zea mays), 5'ss of exon 4
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgat-ataggtgtacttgc-attgttctttttggttatttctccttattatgctacat--gcttgtctata
|||||||| || |||||||| |||| || || ||||| || ||||| || ||||||||||||||| | ||||||| |||||||||| ||| | |||||| | | | | | || || | | ||| | | | | | ||| | || | | | | | ||| |||| | | ||
TCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgtttctctactttcctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaactacttaaacctgct----
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 5
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattat-gctacatgcttgtctata----
||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||||||||| | ||| | || | |||| ||| | | || | | | |||||| || | ||||| || | | | |||||| | |||
TCCTGTATACTTTAATGAGCCAATATCATCTCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTTTCTTCTGGATCGAGCTTATGAGTATGGAAAATCAgtaag---atatacatct-ttatcttgattgtgctattcacttct-cttgcagtgaaaacaatacaaatttcaaagtagtgttggtacatgtccttttattctgt
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 5
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgta---tgcatatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattatgctacatgcttgtctata
||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||| ||||||||| | ||| | | ||||| |||| | ||| | | | | | | ||| | | || | || | |
TCCTGTATACTTTAATGAGCCAATATCATCTCTTCAGAAATGTTTTGAGGACTTTGAGTACTCTTTTCTTCTGGATCGAGCTTATGAGTATGGAAAATCTgtaagatatacatcttgatcttgattgtgttttttttttttttgccttggtaaccaacaaaatttcaaaagtggggggggaccatttctttttttttttt---
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G41940.1 (Glycine max), 5'ss of exon 4
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatg-catatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattatgctacatgcttgtctata-
||| || || ||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||| |||||| ||| ||||| || |||||| | ||| | ||| | | ||||| | | | ||| | | | || | || | | | ||| ||| | | | | | |||| | |
CCCGGTATACTTTAATGAGCCGATATCATCCCTACAAAAATGTTGTGAGGACTTGGAGTACTCTTATCTTCTGGATCAAGCTTATGAGTACGGAAAATCAgtaagatatacatcttgctcttgtt-tatgcctctcacctgtgttgaagtgtaat-caatacaaatttaaaactcgtattgaagttgaatgcccacattttc
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G03420.2 (Glycine max), 5'ss of exon 6
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatg-catatctttat--ctcttactc-tctccctttgatataggtgtacttgcattgttctttttg--gttatttctccttattatgctacatgcttgtctata
||| || || ||||||||||| ||||||||||| || || |||| ||||||||||||||||||||||||| |||||| ||| ||||| || |||||| | ||| | | |||||||| |||| || | | | ||| || | | | | || | ||| ||| | || ||| | | | |
CCCGGTATACTTTAATGAGCCGATATCATCCCTACAAAAGTGTTGTGAGGACTTGGAGTACTCTTATCTTCTGGATCAAGCTTATGAGTACGGAAAATCAgtaagatacatctttatgcctctcaccagtgttcaattgcaatcaatacaaatttaaaactcgtattgaagttgaatgaccacattttcaaaagcacctc------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G22540.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgc-atatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattatgctacatgcttgtctata
|||||| ||||| ||||| |||||||||||||| || ||||||||||| ||||||||||| || ||||||||||| |||||||||||| |||||||| | ||| | | | | ||||||||| | ||| | || | | | || | | | | | || | |||| | |
CCCTGTGTATTTCAATGAACCAATATCATCCCTCCAAAAATGTTTTGAAGACTTGGAGTATTCGTATCTTTTGGACCGAGCATATGAACATGGAAAATCTgtaagtgacaccaaagtctcttact---tatcttgtacattactacattctgtttatcttatattgac-ttaaagcctattggataatcag----------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G12460.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgatataggtgtacttgcattgtt--ctttttggttatttctccttattatgctacatgcttgtctata
||||||||||| ||||| |||||||| ||||| || || |||||||| |||||||||||||||||||| ||||| | |||||||||||| |||||| | ||| | | | |||||| | | | | || | | || | |||| || | | | |||| | | |||
TCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAAAAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATACGGAAAATCCgtaagtgatttcaaaaaacttactgttgtatgtaattcgcttccttctggaaatgcaaacgttttctctactcttaacttttatttaattccaattacta--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700214|gb|EE077994.1|EE077994EST: ACTTGGAGTACTCTTATCTTTTGGATCGAGCGTATGAATATGGAAAAGCG CGAAACAGTCTCCTAAGAGTTCTACATGTTGCAGCTTTTGCGGTTTCTGGA
genomic: ACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatat ... ttgtttctagGGAAACAGTCTCCTAAGAGTTCTACATGTTGCAGCTTTTGCGGTTTCTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgatataggtgtacttgcattgttctttttggttatttctccttattatgctacatgcttgtctata
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc