Sequence
atgc intronic sequence ATGC exonic sequenceATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 3
ATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttag
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ATGCGTTCAACTGTGAGAAGTGTGGCAAAACATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGgtatctaggatgatcattagtttt--acatcatttatt---gagttaaatagtaaatattaattattttttgtttat-----------cagatttactaagtcataaagccatggttacttcatttt-tcag
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G22590.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttag
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ATGCGTGCTGCTGTGAAAGATGTCGCCAAGTACTTCCCAACAGCAATAATTAGTGGTAGAAGCCGTGACAAGgta------agacttctgaacaattaaccataa-cattgtatcagtacaagccaaccaatagtcaaaacactaatacattt-tgagtttgttaatgcag---------------------------------
upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttag
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ATGCGTTCTGCGGTTAAAGATGTCGCGAGTTACTTCCCAACCGCAATAATTAGCGGTAGAAGCCGTGACAAGgta-------aagtcctaaaccgttgtaatcaagtgattgtaaagttgagtact-catagagtttttttttgt---tatatggcag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71858272|gb|DT007327.1|DT007327EST: TCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAG GTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGG
genomic: TCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgaga ... attttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCGCTCAACTGTGAAAAATCTCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttag
- - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC