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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATATTGGCTACAATAATGGGgtaagtttgatccatttctgacccctgatttaggtgatcttgctgttgcttgttcaatatcacatataagctttgttaatgcag

Basic information

species Vitis vinifera
transcript Vv02s0087g00880.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G09520.1 (Glycine max), 5'ss of exon 3
TTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATATTGGCTACAATAATGGGgtaagtttgatccatttctgacccctgatttaggtgatcttgctgttgcttgttcaatatcacatataagctttgtta-atgcag---------------------------------------------------------------------------------------------
|| |||||||||||||  | ||||| || |||||||||||||| ||||||| ||| ||  | |||||||||||||| ||| | ||||||  ||| ||||||| ||||| ||     |   | |  | ||  |  | |  |||    ||| ||     ||  ||  | || |        |||||                                                                                              
TTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCGGCTGCCATACAGCCATCCATTCCAGTCTTTACCTTTCTGTTGGCTGTAATGATGGGgtcagtttcatttcacttgtatcatttatcaatttcaagttgtatgtgcgtgcatcctagaactcaaaaacacaaaggcatgcactcacttgcagtgcagaaatgtgtatattaataaacttattcagatacactgggacatacagtaatctgtatctgtataaaccttttcatgcag

upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G09540.1 (Glycine max), 5'ss of exon 3
TTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATATTGGCTACAATAATGGGgtaagtttgatccatttctgacccctgatttaggtgatcttgctgttgcttgttcaatatcacatataagctttg----ttaatgcag--------------
|| |||||||||||||  | || || || |||||||||||||| |||||   ||| || || |||||||||||||||||| | ||  ||   || ||||||| ||||| |  | | ||     | |   ||  ||  | |   |||   |  |   |||| | || ||    ||     ||||| ||               
TTTTGTTTCTTATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCTGTACAGCCAGCCATTCCAGTCTTTACATTTCTGTTTACTGTGATCATGGGgtcagtttcactcttatccatttctt--cttgagtattttaaatgtctatactattatataaaatttatttattaatcattaattcatcttttttctagaac

upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G45370.2 (Arabidopsis thaliana), 5'ss of exon 3
TTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATATTGGCTACAATAATGGGgtaagtttgatccatttctg-acccctg--atttaggtgatcttgctgt-tgcttgttcaatatcacatataagctttgttaatgcag----
| || |||||||| ||  |    ||||| |||||||||||||| ||||| | ||||||  |||| || |||||||||||| | ||||||    | ||||||| ||| |||      ||   |   |||  |  |  |  |  |||   | |     |||||| |     ||   |||  |   || |     
TACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTGATGGGgtgagtatgagtttcctcaacattactgtaaaatgtgaaaatttgtaatataaagtttcaatcttttg-atggtcttcttctttgtatacag