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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTCATAATAGTGACGTTTGGTAATTATGCATTCATGGATTTTATCCTCACTTGGGTTAAGCACTTGACTGATCTGGGTATCTCCAATCTTCTCGTTGgtaggttcctcattcggacctgtaattacttccttgaaatatcacttttccacatattctatgtcaattttcaagactgttaaggaagtttgaaattgttgttatag

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 3
AATGTCATAATAGTGACGTTTGGTAATTATGCATTCATGGATTTTATCCTCACTTGGGTTAAGCACTTGACTGATCTGGGTATCTCCAATCTTCTCGTTGgtaggt-tcctcattcggacctgtaattacttccttgaaatatcacttttccaca---------tattctatgtcaattttcaagactgttaag---gaagtttgaaattgttgttatag
||||   |||||||||| |||||||| |||||||||||||||||||| || || |||||||| || ||||  ||||||||  | || ||| | || ||||||  |  ||    ||     ||    |||  |       |||| | | | |   |         || |  |  |  || | ||  | | |   |   ||| |||||||      || |||
AATGCTGTAATAGTGACCTTTGGTAACTATGCATTCATGGATTTTATTCTGACGTGGGTTAAACAATTGAGAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatctctgtttaagtcttgttttatctgtcatgtatattattatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctacattttag

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 2
AATGTCATAATAGTGACGTTTGGTAATTATGCATTCATGGATTTTATCCTCACTTGGGTTAAGCACTTGACTGATCTGGGTATCTCCAATCTTCTCGTTGgtaggt-tcctcattcggacctgtaattacttccttgaaatat-cactttt--ccacatattctatgtcaattttcaagactgttaag---gaagtttgaaattgttgttatag
||||  ||||||||||| |||||||| || || |||||||||||||| || || |||||||| || ||||| ||||||||  | || ||| | || ||||||  |  ||    ||     ||    |||  |     | |||| || |  |     | || |  |  |  || | ||  | | |   |   ||| |||||||      || |||
AATGCTATAATAGTGACCTTTGGTAACTACGCGTTCATGGATTTTATTCTTACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttag

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
AATGTCATAATAGTGACGTTTGGTAATTATGCATTCATGGATTTTATCCTCACTTGGGTTAAGCACTTGACTGATCTGGGTATCTCCAATCTTCTCGTTGgtaggttcctcattcggacctgtaattacttccttgaaatatcacttttccacatattctatgtcaattttcaagac--tgttaaggaagtttgaaattgttgttatag
||||| || |||||||| ||||| || ||||| || |||||||| ||  | ||||||||||| |||||||||||| | | | |||||||| |||| ||||||  |||          || | ||||  ||   |   | | ||  |||  |||    | | ||| | ||   ||     ||||| ||   |||  |             
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtc-------acttctaatatctatttctgattgtccattt--cactggctttctgtaagttagtaactttatgttatggggctttatag------------