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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagacaactgtttgaagttttgtttcatgatgtatatagtgattggttgctaagaaattggaggaaagggaaagaaaattatgggattttattact...

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G35480.3 (Glycine max), 5'ss of exon 3
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgta----ccag---acaactgt---ttgaagttttgtttcatgatgtatatagtgattggttgctaagaaa-----ttggaggaaagggaaagaaaatt--------atgggattttattact-----------------------------
|||| |||||||| || ||||| ||||||||  | ||||||||||||||  |||||||||||||||||||||||    |||||||     || |   |||| | |   |  |   || || | |  |  |  |   || ||  ||| |  |        ||   | |||   | | ||  ||        ||||  ||| | |  |                             
TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccctgtctacaaatttccatcaataattagtcttaaaaaatcaaatttggttcattgttctgcctcatcttttttgaaaaatcatataaggtttattttcaatggtttttaacttttcatttcttaatctatttcgtttctactag

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G08230.1 (Glycine max), 5'ss of exon 2
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagacaactgtttgaagttttgtttca-tgatgtatatagtgattggttgctaagaaattggaggaaagggaaagaaaattatgggattttattact-----
|||| |||||||| || ||||| ||||||||| | ||||||||||||||   |||||||||||| ||| | ||||| |||||||||        || |  | |   | ||  || | || ||| |  | | |   |  |      |||     ||   |   | ||  ||| | |   |  |||     
TTTGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAAAAGGGATTAACAACTGGATTGTTCACATTGAGgtat---gttcctttcaggaaagtggtaccaataatatatctttttaatacattttgtt---ttgagtacaatacagctagaacaatgcgctaccaacactctcta

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G08240.1 (Glycine max), 5'ss of exon 3
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagacaactgtttgaagttttgtttcatgatgtatatagt-gattggttgctaagaaattggaggaaagggaaagaaaattatgggattttattact-
| || |||||||| || ||||| ||||||||| | |||||||||||||| | ||||||| |||| ||| | ||||| ||||||||      |   |     ||||        || ||  || |  |  ||  |||        |    |  |  |  | |  ||    |  | |   | |||| 
TATGTTTGGATGGAAGTCCACCAGCTTACCACTTTGATAAGGGATTTGGAGAAGGGATTGACAACTGGATTGTTCACATTGAGgt-ttgttcctttcagcaaagtggcaccg-ataatacatctttttaatacgttttgttatgagcacaatatggctataacaatgcgttagctacgaatactc

upper sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G35050.1 (Glycine max), 5'ss of exon 3
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgta-------ccagacaactgt---ttgaagttttgtttcatgatgtatatagtgattggttgct-------aagaaattggaggaa--agggaaagaaaattatgggattttattact------------------------
|||| |||||||| || ||||| ||||| ||  | |||| |||||||||  |||||||||||||||||||||||    ||||||||       |   |||| | |   |      || || | || |   | ||  || ||  ||| |       |     |||||  ||  |   || |   ||| |      || ||| |                        
TTTGTTTGGATGGGAGTCCACCAGCTTATCATTTTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccactctccacaaatttccatcagtaattagtcttataaatcaaatt-tggttcattgttttgcctcacctttttggacaaatcatataaggtttattttcaatcgtttttaatcttaatctatttcatttctactag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184751|gb|CF604105.1|CF604105
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCTTCTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|71856065|gb|DT005120.1|DT005120
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110719772|gb|EE095190.1|EE095190
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|22010091|gb|BQ795125.1|BQ795125
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|294964082|gb|GW837885.1|GW837885
EST:     TGGATAAGGGATTTGGTGCAGGGATCAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352768101|gb|FQ467240.1|FQ467240
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|37184707|gb|CF604061.1|CF604061
EST:     TGGATAACGTATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110698014|gb|EE075544.1|EE075544
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110685994|gb|EE063201.1|EE063201
EST:     TGGATAAGGGATTTGGTGCAGGTATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110687331|gb|EE064646.1|EE064646
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110701053|gb|EE078256.1|EE078256
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|28968205|gb|CB347238.1|CB347238
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|30322666|gb|CD005928.1|CD005928
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110698866|gb|EE076852.1|EE076852
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|33410293|gb|CF215920.1|CF215920
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|37183780|gb|CF603134.1|CF603134
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352782414|gb|FQ470317.1|FQ470317
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352767915|gb|FQ466124.1|FQ466124
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110720782|gb|EE097004.1|EE097004
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|30322537|gb|CD005799.1|CD005799
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110728091|gb|EE103366.1|EE103366
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|71858006|gb|DT007061.1|DT007061
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352764078|gb|FQ467648.1|FQ467648
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352763755|gb|FQ473458.1|FQ473458
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGCTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCCGTAGGGACAA
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTC-GTAGGGACAA
EST: gi|110698827|gb|EE076773.1|EE076773
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352781577|gb|FQ468875.1|FQ468875
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110698396|gb|EE075846.1|EE075846
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110710999|gb|EE087696.1|EE087696
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|71856420|gb|DT005475.1|DT005475
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|32458466|gb|CD799640.1|CD799640
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|37188407|gb|CF607756.1|CF607756
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|33408383|gb|CF214010.1|CF214010
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|294964094|gb|GW837897.1|GW837897
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|161714707|gb|FC062675.1|FC062675
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110698242|gb|EE075557.1|EE075557
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110721907|gb|EE097675.1|EE097675
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAAGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|110730159|gb|EE106923.1|EE106923
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|18458990|gb|BM437268.1|BM437268
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|34548179|gb|CF516411.1|CF516411
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGCTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|71857920|gb|DT006975.1|DT006975
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACA
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACA
EST: gi|110690730|gb|EE068155.1|EE068155
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
EST: gi|352778255|gb|FQ465565.1|FQ465565
EST:     TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAG                         GGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC
genomic: TGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagaca ... ttgatatcagGGAGGAGGATGGTGCAACAATGCCTCAACTTGCCTTGCTCGTAGGGACAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgtaccagacaactgtttgaagttttgtttcatgatgtatatagtgattggttgctaagaaattggaggaaagggaaagaaaattatgggattttattact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa