1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGACCTGGAGGCCCATTCAGCTTTGATTTCTTCTCTGAGAAATGGAAGAACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacctttattttttaggacctagcatactatttaatttagaaaaatgtggccatttcagtggaaaaagttaaaatagttgtaaatggtatttgt...
species | Vitis vinifera |
transcript | Vv02s0033g01160.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|37183440|gb|CF602794.1|CF602794
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|161718564|gb|FC069317.1|FC069317
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|71868835|gb|DT017890.1|DT017890
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|352791235|gb|FQ477520.1|FQ477520
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|349827297|gb|FQ421570.1|FQ421570
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|351025022|gb|FQ433439.1|FQ433439
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110726338|gb|EE102030.1|EE102030
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|351038309|gb|FQ461001.1|FQ461001
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|352795000|gb|FQ477110.1|FQ477110
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAAAAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110713285|gb|EE089070.1|EE089070
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAGACAATCCTCTTCTAAG GGAGGAGACTCACCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|71860480|gb|DT009535.1|DT009535
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAGAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCEST: gi|110698939|gb|EE077013.1|EE077013
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATC
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110378504|gb|EC943641.1|EC943641
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110712750|gb|EE088067.1|EE088067
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|351017064|gb|FQ424491.1|FQ424491
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|30125180|gb|CB910519.1|CB910519
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110727083|gb|EE103459.1|EE103459
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110407178|gb|EC972775.1|EC972775
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: AACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110712841|gb|EE088241.1|EE088241
genomic: AACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110733060|gb|EE108901.1|EE108901
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110711968|gb|EE089049.1|EE089049
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110711233|gb|EE087512.1|EE087512
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|110711111|gb|EE087284.1|EE087284
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGGAAATGAGTGGTTGAAGACEST: gi|110711472|gb|EE087993.1|EE087993
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGG-AAATGAGTGGTTGAAGAC
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACTEST: gi|294966579|gb|GW837714.1|GW837714
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGGCATGGGAAATGAGTEST: gi|351026203|gb|FQ428215.1|FQ428215
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGT
EST: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAG GGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
genomic: ACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacc ... ttcctttcagGGAGGAGACTCATCCAAACATGAAGCCATGGGAAATGAGTGGTTGAAGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACCTGGAGGCCCATTCAGCTTTGATTTCTTCTCTGAGAAATGGAAGAACCAGAAAAGGAAATCTGAATCATCTAACAAGAAACAATCCTCTTCTAAGgtacataacctttattttttaggacctagcatactatttaatttagaaaaatgtggccatttcagtggaaaaagttaaaatagttgtaaatggtatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatag