1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGTGGATATGTTTGGAAACCGCATTGGATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgattaacatctccagtgttttgcttctgggtttagatttatctcaatctgcaccattcagttagagcacaggctttctacttctggatagttgtg...
species | Vitis vinifera |
transcript | Vv02s0025g04840.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTEST: gi|26258628|gb|CA809691.1|CA809691
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
EST: GATGTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTEST: gi|37183638|gb|CF602992.1|CF602992
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
EST: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTEST: gi|71862348|gb|DT011403.1|DT011403
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCT
EST: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTEST: gi|110391337|gb|EC956303.1|EC956303
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
EST: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTTEST: gi|34546915|gb|CF515147.1|CF515147
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
EST: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGACCCTTEST: gi|110422883|gb|EC989216.1|EC989216
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
EST: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAG GTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
genomic: GATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgatta ... accttcttagGTTCCTGGCATTGTGTTTGCAAGAGGACCAGCTGTAGCTGTGCTGATCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTGGATATGTTTGGAAACCGCATTGGATTTCTCAAGTTCAAAGCAGATATTCTTGATAAGGAGACGGGGAAAAAGgtattgattaacatctccagtgttttgcttctgggtttagatttatctcaatctgcaccattcagttagagcacaggctttctacttctggatagttgtg
- - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA