Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAAGTTCCTGACTCAAAGACAAATTTTCCACATCTTCTTTCTGATGCCAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatctttagttttataatgctccttactgccatgttttatgtatatcatgacttgatcactccactgaacttctgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03420.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821698|gb|FQ413014.1|FQ413014
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351043111|gb|FQ451284.1|FQ451284
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|349812996|gb|FQ411236.1|FQ411236
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351051854|gb|FQ455268.1|FQ455268
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|349827307|gb|FQ421580.1|FQ421580
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351025649|gb|FQ426663.1|FQ426663
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351057015|gb|FQ448532.1|FQ448532
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351033268|gb|FQ462040.1|FQ462040
EST:     C-AACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351055512|gb|FQ442308.1|FQ442308
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351027423|gb|FQ444672.1|FQ444672
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351034126|gb|FQ463060.1|FQ463060
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGGATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351013982|gb|FQ434134.1|FQ434134
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351032387|gb|FQ461640.1|FQ461640
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351039821|gb|FQ464859.1|FQ464859
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351047995|gb|FQ441167.1|FQ441167
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351023952|gb|FQ423375.1|FQ423375
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|349807359|gb|FQ401351.1|FQ401351
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|352798974|gb|FQ480823.1|FQ480823
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|349813871|gb|FQ414105.1|FQ414105
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|351037038|gb|FQ465030.1|FQ465030
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGGTAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
EST: gi|349812998|gb|FQ411238.1|FQ411238
EST:     CAAACTCCATGAAAGCATCCGTTCCATTAGAGACGATAGTAGTTGGGAAG                         GCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA
genomic: CAAACTCCATGAAAGCATCTGTTCCATTAGAGACGATAGTAGTTGGGAAGgtaaagatct ... acttctgcagGCGATGTGAATATTTTAAAAACACATGATACAATACATTTAGGAGAAAGTA