1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAACAATGCAGGGGTTATGGCCACTCCATTCCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttcattgaagttttctgacagtagttgttataatatgtaaacttcttggtggaaaaaaaaaatttattcatggggagagggtcgaacagcttct...
species | Vitis vinifera |
transcript | Vv02s0025g03380.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGACAACATAGAGGTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTGTGCTGGAAACCATGAAAAATACAGCACEST: gi|110369965|gb|EC934139.1|EC934139
genomic: ATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|161715967|gb|FC068756.1|FC068756
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|110373040|gb|EC937247.1|EC937247
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|71857391|gb|DT006446.1|DT006446
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|110395392|gb|EC961055.1|EC961055
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|110394584|gb|EC959749.1|EC959749
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|71868300|gb|DT017355.1|DT017355
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|110361021|gb|EC924471.1|EC924471
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|110417605|gb|EC983675.1|EC983675
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|110712661|gb|EE087900.1|EE087900
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACEST: gi|161706209|gb|FC055419.1|FC055419
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAATGCAGGGGTTATGGCCACTCCATTCCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttcattgaagttttctgacagtagttgttataatatgtaaacttcttggtggaaaaaaaaaatttattcatggggagagggtcgaacagcttct
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaga