1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattttcatccttatatatgtccatgtgtgtgaataaactgatttgcaagctcgctattcttttttttttttttttcaatgggaatctgccctaa...
species | Vitis vinifera |
transcript | Vv02s0025g02530.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTCGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|351026858|gb|FQ436511.1|FQ436511
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|351020085|gb|FQ445692.1|FQ445692
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|349832656|gb|FQ422014.1|FQ422014
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|37184744|gb|CF604098.1|CF604098
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|351014624|gb|FQ437626.1|FQ437626
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|351023984|gb|FQ423407.1|FQ423407
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|351025815|gb|FQ427827.1|FQ427827
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|110391840|gb|EC956843.1|EC956843
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAEST: gi|351029228|gb|FQ435428.1|FQ435428
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
EST: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGT CTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
genomic: GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattt ... ccaacaacagCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTgtaagcattttcatccttatatatgtccatgtgtgtgaataaactgatttgcaagctcgctattcttttttttttttttttcaatgggaatctgccctaa
- - - - - - - - - - AGTGGA
- - - - - - - - - - GTGGAG
- - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaatc