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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGAAGCCGCTGAGAAAGAAGCCGCACTAGCTAGAATGCGGCAGGAGAAAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccacttttaatattccttaatccagttcttaatttggattgtcagctaggacctatttaccttagcatggtctcttttgatataaagtcatttat...

Basic information

species Vitis vinifera
transcript Vv02s0025g02340.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02340.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G31660.1 (Glycine max), 5'ss of exon 3
ACGTGAAGCCGCTGAGAAAGAAGCCGCACTAGCTAGAATGCGGCAGGAGAAAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccacttttaatattccttaatccagttcttaatttggattgtcagctaggacctatttaccttagcatggtctctt--ttgatataaagtcatttat-----
||  ||||| || |||||| |||| ||| ||||||  || || || |||||||||||||| |||||    ||||||| ||||||||||||||| || |||||     | |   || |||   ||    || | ||  ||   |||    ||    ||     ||  || ||||| |   ||  ||||| ||   || | |||     
ACAAGAAGCTGCCGAGAAACAAGCTGCATTAGCTAACATACGTCAAGAGAAAGCTCTGTCTCTTGGTGAAGAACCTGCAAAAGGACCTAATGTTACACAGgtacagta-tccaaagatt---tagcttagattttgtttcttatttagtgcctttactctgcta--ttggcatgtttcattagttgatttagt-tcgtatatctgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402747|gb|EC963354.1|EC963354
EST:     AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAG                         GTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
genomic: AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccact ... gatcaattagGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
EST: gi|110363592|gb|EC927191.1|EC927191
EST:     AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAG                         GTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
genomic: AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccact ... gatcaattagGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
EST: gi|30299679|gb|CB976473.1|CB976473
EST:     AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCGG                         GTATTGGTACGATTTCCCACCGGAGAACACAAGGGCGGAAGGTTCCATAGT
genomic: AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccact ... gatcaattagGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
EST: gi|110684853|gb|EE062608.1|EE062608
EST:     AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAG                         GTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
genomic: AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccact ... gatcaattagGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
EST: gi|161708570|gb|FC060429.1|FC060429
EST:     AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAG                         GTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
genomic: AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccact ... gatcaattagGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT
EST: gi|30299606|gb|CB976400.1|CB976400
EST:     AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCGG                         GTATTGGTACGATTTCCCACCGGAGAACACAAGGGCGGAAGGTTCCATAGT
genomic: AAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGgtgatccact ... gatcaattagGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGT