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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt...

Basic information

species Vitis vinifera
transcript Vv02s0025g01720.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g36950.2 (Oryza sativa), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgt----ctgttctccaatcttacttgatctgccaaactgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt--
||||| |||||||| ||||||||||| ||||| || || |||||||||||||||||||| ||||| || ||||||||||| |||||     || ||| |||  |  | |||     || | ||| |   | |   |    ||  ||    || || |  |     ||  ||   | |    | |||||  
GCTGCGAGCTTTGGCGGAACAAACATCGATCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattgatcttcaacttcccatga---atcagattgttt---tcgctcaaatttctgcacttccacatgttttaatatgtaattaagtgtatttaggaattag

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgc-caaactgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt
||||||||||| |||||| | ||||| |||||| | ||||||||||||||||||||||| ||||| || ||||||||||||||||| | |  |||||||  ||      ||| ||  || | |  |||  |   |      |||    |  | | |  ||   |  ||||  |  |  |  ||| 
GCTGCAAGCTTCGGAGGATCCAACATCGATCCAGCAGCTTGGGAGGACAAGAAGTGCCCCGGCGAGTCCCGCTTCCCTGCTCAGgtatctgatccaatccaacagaggatgctcagcctctatgattgtccattttacatgcaatactagctatagaatgacttgattgtcaaaagaaa-aaatg

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC207342.3_FGT008 (Zea mays), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtc-tgttctccaatctta-cttgatctgccaaactgtgtagttg-ggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggcc-atgaatt-----
|| || ||||| || || || ||||| || || || || |||||||||||||||||||| ||||| || ||||||||||| |||||  |   || |||||    |    ||| ||||    || || |   ||  ||  ||  |         | |  | |   ||| | |   | |  | || |  |     
GCCGCCAGCTTCGGCGGGACCAACATCGACCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtagtacgcttcaatccagtccccttcttccaattaatgcagctccagcctctcctctcc---------tctcctctcccgtcatggcggacgatcgatcagctcaacc

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G071154_T01 (Zea mays), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgt---ctgttctccaatcttacttgatctgccaaactgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt
|| || ||||| || || || ||||| || || || || |||||||||||||||||||| ||||| || ||||| ||||| |||||   ||  | | |  |||   | ||||  |      ||     | | |||  || |||    |||      ||    ||||  | |   |   | | | |  
GCCGCGAGCTTCGGCGGGACCAACATCGACCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTTCCTGCGCAGgtaccctactgtactgtctgcttcgatccacagtctagtact-ctagtctagcagccat-ggcggcggcggcggcggcgggtgatcgatcagctcaacgtac-

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G16100.1 (Glycine max), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagt--tgggctactagtcat-caaaggcaaatttggtttggggtctttgtatatggccatgaatt
|||||||| ||||||||| | || ||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| | |  ||   || |     |||     || | | |  |        || | | || | ||    |||||  |        ||   || |    |||    
GCTGCAAGTTTTGGAGGATCCAATATTGATCCAACGGCTTGGGAGGACAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGgtatata-tcatctcatctccaatcaaattaattttattatatctatgcacaaattatgctaatattaattttataaatttaattaaaatgtactgatgct--

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G10640.1 (Glycine max), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt--
|||||||| ||||||||| | || ||||||||||| ||||||||||| |||||||||||||| ||||| || |||||||||||||| | |  ||   || |      ||     || ||| |  |    |||      |   | |  ||  ||  |||      |||   ||     |   ||   
GCTGCAAGTTTTGGAGGATCTAATATTGATCCAACGGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCTGCTCAGgtatata-tcatctcatctccagtccaattaattgtattat-atcctatgcacaactcatgctaatattaattttataaatttaattaaatttactgatacc

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G36700.1 (Glycine max), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagttgggcta-ctagtcatcaaaggcaaatttggtttggggtctttgtatatggc-catgaatt------
|||||||| |||||||| ||||| ||||||||| | ||||||||||| |||||||||||||| ||||| || ||||| ||||||||     ||  ||||  |||       | ||| || ||| || || || ||| |||| ||  |   ||   | |        |  || | | |  |   ||       
GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgta-acactgtaatccaact-------ctaaattgagtaattaggttatctaatcataaattgtttatacagataattactatcttacaagtcatactgatgataaca

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G02840.1 (Glycine max), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttact-tgatctgccaaactgtgtagttgggctactagtcatcaaaggcaa-atttggtttggggtctttgtatatggccatgaatt-
|||||||| ||||||||  |||| ||||||||| | ||||||||||| |||||||||||||| ||||| || ||||| ||||||||     ||  ||||  ||| | |  ||  ||| |  ||  |      |  | |  |  |   | | |  |   ||        |    |||   |   ||| 
GCTGCAAGTTTTGGAGGGTCAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgta-acactgtaatccaactctaaattgagaaattaggttatctaatcataaattgtttataccgataactatcttacaagtcataccgatgataac--attg

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G42050.1 (Arabidopsis thaliana), 5'ss of exon 2
----------------GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagttgggctactagtcat-caaaggcaaatttggtttggggtctttgta-tatggccatgaatt
                || || ||||| |||||||||||||||||    | |||||  || |||||||| || ||||||||||| || ||||||||||||||   | ||     |||||||  | |||    || ||   |   |||  |    |        |||||||  ||||||||  |   | ||  |         
TCATGGAATCTACGAGGCAGCTAGCTTCGGAGGAACAAACATTGAGTTGAATGCTTTTGAAGACAAGAAATGTCCTGGCGAATCTCGTTTCCCTGCTCAGgtac-tactatgtacttactttct-tgcgtttctttgagctcttgcttttgtctaaatgctaacaaattt--tttggggtaataaaaataaag---------

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S6_446V6.1 (Physcomitrella patens), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctcca-atcttact-tgatctgccaa-----actgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt-----------------------------------------------------------------------------------
|||||||||||||||||  | ||||| |||||||| |||||||| |||||||||||||  || |||||| | || ||||| ||||| | | ||||  ||||| || | || | |  |       ||   |||| ||  |       |||      |  |    ||| ||||| |  | |||   |     |                                                                                   
GCTGCAAGCTTTGGAGGCTCCAACATAGATCCAACAGCTTGGGAAGACAAGAAGTGCCGCGGAGAATCAAGATTTCCTGCACAGgtttttgctcctcatctttctattatattcttactgcagttgcaaagttaggggaaggtatgtcatgaatcatgtcttcttgtggtctcttgaaatgctgagtgcctcaacctctccagatggtcgacaatcaccagagtcgcattttgaactgccattggaataatgtttcttcgtgtgtggggatcag

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ22023 (Selaginella moellendorffii), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaact-gtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt
||||| || ||||| ||  ||||||| ||||| ||||| ||||| ||||||||||| | ||| ||||| || |||||||| ||||| ||| || || |  |   | || |||    |  | ||   || |   |  | | |  ||       | | ||||   |||                   
GCTGCGAGTTTTGGGGGCTCAAACATAGATCCTACTGCGTGGGAAGACAAGAAGTGTCGTGGAGAATCTCGGTTCCCTGCACAGgtttgt-cttcacttctttctcatttgcttctcgagcgtgtgtgaggatccgggctt--aactttctctcgctttgtcctctccag---------------

upper sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ24245 (Selaginella moellendorffii), 5'ss of exon 3
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgt-----gtagttgggctactagtcat-caaaggcaaatttggtttggggtctttgtatatggccatgaatt
||  |||| ||||||||  | ||||| ||| ||||||| |||||||||||||||||||  || || ||  | ||||| |||||||| |||    |  | |         |   || || |     ||  ||| ||| | ||   | |||||| |||      | | | ||     |||  |         
GCAACAAGTTTTGGAGGCTCCAACATCGATGCAACTGCGTGGGAGGACAAGAAGTGCCGCGGAGAGTCGAGATTCCCAGCTCAGgtttgtctctcgttttctaggagaatagaaagctttttcttgttcttgagctgcaagagctacaaaggaaaaccca--tcgtgatccc---atacag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34364106|gb|CF405691.1|CF405691
EST:     GTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: GTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110726776|gb|EE102853.1|EE102853
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110407354|gb|EC972954.1|EC972954
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|28962679|gb|CB341712.1|CB341712
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|29783652|gb|CB349968.2|CB349968
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110406653|gb|EC972233.1|EC972233
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|22015188|gb|BQ800222.1|BQ800222
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|37184496|gb|CF603850.1|CF603850
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|83275636|gb|DV939644.1|DV939644
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110725596|gb|EE102277.1|EE102277
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|352777407|gb|FQ474041.1|FQ474041
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|37186440|gb|CF605793.1|CF605793
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|34547922|gb|CF516154.1|CF516154
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|34320297|gb|CF373051.1|CF373051
EST:     TGCTT-GGAGGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCNCCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: TGCTTGGGA-GGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|34546867|gb|CF515099.1|CF515099
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|30137123|gb|CB922461.1|CB922461
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|32265497|gb|CD716350.1|CD716350
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|26262984|gb|CA814047.1|CA814047
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|254914214|gb|GR906315.1|GR906315
EST:     CTGGCGAATCACGCTTCCCCGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|352768383|gb|FQ469558.1|FQ469558
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|33407310|gb|CF212937.1|CF212937
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCGGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110726023|gb|EE103098.1|EE103098
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCANGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|32458755|gb|CD799929.1|CD799929
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCACTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|33406561|gb|CF212188.1|CF212188
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|352776555|gb|FQ474857.1|FQ474857
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|30132757|gb|CB918096.1|CB918096
EST:     CACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|32272493|gb|CD721652.1|CD721652
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|29783826|gb|CB350276.2|CB350276
EST:     TGCTTGGGAGGACAAGAAGTGCCCTGATC-AATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: TGCTTGGGAGGACAAGAAGTGCCCTGG-CGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|28965525|gb|CB344558.1|CB344558
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110732396|gb|EE107656.1|EE107656
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|34546688|gb|CF514920.1|CF514920
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|45770714|gb|CN006566.1|CN006566
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|32269333|gb|CD718492.1|CD718492
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110376766|gb|EC941841.1|EC941841
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|110725858|gb|EE102801.1|EE102801
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAAGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|22012251|gb|BQ797285.1|BQ797285
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
EST: gi|254917278|gb|GR906104.1|GR906104
EST:     CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG                         GTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC
genomic: CTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctc ... ttgtgaatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagttgggctactagtcatcaaaggcaaatttggtttggggtctttgtatatggccatgaatt

- - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggcaaa