Sequence
atgc intronic sequence ATGC exonic sequenceGCTGGTAAATATGTGTGGCTAACTTATAAAGAAGTATATGACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAAgtaagtcagtgtctgataatttatttgttaatggtagagtttgaacctatattgagacagatctaaggggaacacttattagatggccaagtttgagcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 3
GCTGGTAAATATGTGTGGCTAACTTATAAAGAAGTATATGACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAAgtaagtcagtgtctgataatttatttgttaatggtagagtttgaacctatattgagacagatctaaggggaacacttattagatggccaagtttg-agcct-
| || || || ||||||||| || ||||||||||||||| | |||||||||||||| ||||| |||||||| |||||| | ||||||||||| | ||| || |||| || ||| | || ||| ||| || | | | || || ||
CCAGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATGAAAGTTGGGAATTCTATCCGCAGCTGTGGTTATGGAAAAgtaagtcagctgtgtctttcttacctgaaaatga-agcattttttcata-gttgtttcagtagtattattatgttattccaaattcttggattcacagtaca
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G43470.5 (Glycine max), 5'ss of exon 3
GCTGGTAAATATGTGTGGCTAACTTATAAAGAAGTATATGACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAAgtaagtcagtgtctgataatttatttgttaatggtagagtttgaacctatattgagacagatctaaggggaacacttattagatggccaagtttgagcct---
| || || || ||||||||| || ||||||||||||||| | |||||||||||||| ||||| |||||||| |||||| | |||||||||||| | ||| | |||| | ||| | | ||| ||| || || | | | || ||
CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATGAAAGTTGGGAATTCTATCCGCAGCTGTGGTTATGGAGAAgtaagtcagctgtgtctttcttaccagaaaatgaagcatttt---tccaagttgtttcagtagtatattatgtcattccaaattcttggatttacagtacatg
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G36910.1 (Glycine max), 5'ss of exon 3
GCTGGTAAATATGTGTGGCTAACTTATAAAGAAGTATATGACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAAgtaagtcagtgtctgataatttatttgttaatggtagagtttgaacctatattgagacagatctaaggggaacacttattagatggc--caagtttgagcct
|||| || || ||||| |||||| |||||||| |||||| |||||||| ||||| ||||||||||| ||||||| || ||| | | || | |||| | | | || | | | | | | | || | | | ||| | | | ||| || | |
CCTGGCAAGTACAAGTGGCAAACTTACAAAGAAGTGTATGACTTGGTGATGAATGTTGGCAATTCCATCCGTGCTTGTGGTTACGGGGAGgtatgcta-cacatgcttattttcatttcaccgg-aaaatgaaaccatgtgttttctttcacttgttttaacactttaatgtgttactccaatatttaatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352781555|gb|FQ468399.1|FQ468399EST: ACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAA GGAGGACGATGTGGTATCTATGGTGCTAATTCTGCTGAGTGGATCATGAGC
genomic: ACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAAgtaagtcagt ... tggcttttagGGAGGACGATGTGGTATCTATGGTGCTAATTCTGCTGAGTGGATCATGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGGTAAATATGTGTGGCTAACTTATAAAGAAGTATATGACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAAgtaagtcagtgtctgataatttatttgttaatggtagagtttgaacctatattgagacagatctaaggggaacacttattagatggccaagtttgagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaca