1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTGCTGGGGTTGAGAGAAGCTCTAAGGAAAGCTGGAGATGCAAAAGAAAGCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatgggaaaggctcaatgttttatttatttgttcaccatcctaattaccccgattcctcaatcatatgttcttctctattatgtcagagactattccttgtatttttctgcag
species | Vitis vinifera |
transcript | Vv02s0025g01270.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|27578659|gb|CB001354.1|CB001354
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|27578903|gb|CB001598.1|CB001598
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCNATCAA-TTATCACTTGCAATTCAACEST: gi|27579254|gb|CB001949.1|CB001949
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCC-ATCAAATTATCACTTGCAATTCAAC
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|30322017|gb|CD005279.1|CD005279
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: CTCATCTGATGTAGTTTCAGGGATCAAAGAGGGAGGAACCTTCCATCTAG GTGCTCTGTTGCTTCCATTCTTCCCAEST: gi|27581441|gb|CB004136.1|CB004136
genomic: CTCATCTGATGTAGTTTCAGGGATCAAAGAGG-AGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCA
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATEST: gi|27580807|gb|CB003502.1|CB003502
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCAT
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|27581271|gb|CB003966.1|CB003966
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: CTCATCTGATGTAGTTTCAGGGGATCAA-GAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCANATTCA-CEST: gi|56408420|gb|CX016672.1|CX016672
genomic: CTCATCTGATGTAGTTTCAGGG-ATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCA-ATTCAAC
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|27578630|gb|CB001325.1|CB001325
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|110694739|gb|EE072110.1|EE072110
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACTEST: gi|30322048|gb|CD005310.1|CD005310
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCANATTATCACTTGCAATTNCA-CEST: gi|27579820|gb|CB002515.1|CB002515
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATT-CAAC
EST: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAG TTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
genomic: GCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatggga ... ttttctgcagTTGCTCTGTTGCTTCCATTCTTCCCATCAAATTATCACTTGCAATTCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCTGGGGTTGAGAGAAGCTCTAAGGAAAGCTGGAGATGCAAAAGAAAGCTCATCTGATGTAGTTTCAGGGATCAAAGAGGAGGAACCTTCCATCTAGgtacatgggaaaggctcaatgttttatttatttgttcaccatcctaattaccccgattcctcaatcatatgttcttctctattatgtcagagactattccttgtatttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA