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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGATGTAATCTTAAGAGTAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacatttttctcacttatcctttctgagggctcatttatgaaatgcaattagactctaagcttctgttgctgttagttattaatagggatgcattgtca...

Basic information

species Vitis vinifera
transcript Vv02s0025g00670.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351040263|gb|FQ425349.1|FQ425349
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|351016602|gb|FQ424029.1|FQ424029
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|77584644|gb|DV221403.1|DV221403
EST:     TGATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|351022824|gb|FQ428733.1|FQ428733
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|349822171|gb|FQ412435.1|FQ412435
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAGACCATACTCCAG                         GTTATGCTCCTCTGG
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGG
EST: gi|351049470|gb|FQ450071.1|FQ450071
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|349816396|gb|FQ403771.1|FQ403771
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|349819224|gb|FQ412118.1|FQ412118
EST:     AATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATTACTCCCG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGAT
genomic: AATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCAT-ACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGAT
EST: gi|351045186|gb|FQ451634.1|FQ451634
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|294967132|gb|GW840007.1|GW840007
EST:     TGATCGGGAAGCCATGGGTTGTNCCGTGGACATCANAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATT
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGAT-
EST: gi|351035427|gb|FQ459694.1|FQ459694
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|349816281|gb|FQ399391.1|FQ399391
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCCTACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCAAGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|349809405|gb|FQ411903.1|FQ411903
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAAAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
EST: gi|351055490|gb|FQ442286.1|FQ442286
EST:     TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAG                         GTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC
genomic: TAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacattttt ... aacaatgcagGTTATGCTCCTCTGGATTGTATCATTCTGGTTTGTGGGATCATGGATGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCTGATGTAATCTTAAGAGTAATCGGGAAGCCATGGGTTGTTCCGTGGACATCAGAAACCATACTCCAGgtacatttttctcacttatcctttctgagggctcatttatgaaatgcaattagactctaagcttctgttgctgttagttattaatagggatgcattgtca

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataggga