1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCTGATGAGGTGGTACAAATGGACCGTGGAGCAATTTGAGGGACTTAATAACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGgtaatactttcataattctctctaatactctattaactacattttccccaccaatactatgggaacttgcttttcagtccatgtgtcacatccctatctt...
species | Vitis vinifera |
transcript | Vv02s0025g00180.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAG GTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACTEST: gi|30321216|gb|CD004478.1|CD004478
genomic: AACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGgtaatacttt ... atttctacagGTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACT
EST: AACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAG GTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACTEST: gi|30320713|gb|CD003975.1|CD003975
genomic: AACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGgtaatacttt ... atttctacagGTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACT
EST: AACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAG GTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACT
genomic: AACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGgtaatacttt ... atttctacagGTACAGCTTATTAATGCACCACACTGAAGAAGAGCTGAGAAACTTTGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGATGAGGTGGTACAAATGGACCGTGGAGCAATTTGAGGGACTTAATAACCTGGGCAATGGAGATATGATTGTCATGGAAAAAGGCTATGGTGGAAGgtaatactttcataattctctctaatactctattaactacattttccccaccaatactatgggaacttgcttttcagtccatgtgtcacatccctatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc