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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaacataaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcag

Basic information

species Vitis vinifera
transcript Vv02s0025g00070.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G150867_T02 (Zea mays), 5'ss of exon 3
GTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagt-tagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaaca-taaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcag
|| | |||||| | || || || || |||||||| |||||||| ||||| ||||| ||||||||  |||| ||||| || ||||||||||| ||||| ||||||||    | ||  |  |  ||||  ||| |  |      | | |  ||||     | ||  |   || || |   | |  | ||       ||                                 
GTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGTATCCTTACAAATCCCCATCGATTGGTTTCATCAATAAGATATATCACCCAAATGTCGATGAAATgtgagtacttttgaactcaatgacctgttacctt-gtcaatttcaaccacattaaaaatctagctcctaaccactcctggatgaatgcaacctgcag--------------------------------

upper sequence: Vv02s0025g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G053764_T03 (Zea mays), 5'ss of exon 3
GTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaacataaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcag
|||| |||| | | ||||| || || || ||||| |||||||| ||||| || || || || ||  |||||||||| || ||||||||||| |||||||||||||    |    || | ||||    |   | |  ||     ||        ||| |  ||      |||||       |  || | || |   |    | |||   |                  
GTGTCTGGAAGGTTAGGGTAGAACTGCCTGATGCATATCCTTACAAATCCCCGTCCATCGGCTTCATCAACAAGATTTATCACCCAAATGTCGATGAGATgtgagc--attatggtcttaaactatttttcttattttattgaag--------ttcatgcatggagttaacatttcctt-acctgttcttatttgactgcaaaatgcag------------------

upper sequence: Vv02s0025g00070.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S161_122V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGTGTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagtggatgtttaa---aaccta--gtacttcagcttgcatgagctgcatttttcttatatatgacaaacataaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcag
|    ||||  ||  | || ||  | || ||||||||||| || |||||||| || ||||| ||||| |||| ||||| ||| ||||| || |||||||||| || | ||  |||| ||     | ||   ||  ||| |     ||   |  |||  ||||  | | |        ||| |    |    ||||| ||  |                              
GGACCTGGAAAATCCGAGTTGAATTGCCCGATGCTTATCCCTACAAATCTCCTTCCATTGGGTTTGTGAACAGGATCTTCCATCCAAACGTGGATGAGATgtaagat-gtccatgtctagttcgatctgttgtttttcggtcgtaatttacctcatagttctggtgtgtattc--tgtaacgttctaccctttttcgcacttc-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77588071|gb|DV223245.1|DV223245
EST:     CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGAT                         GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
genomic: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagt ... tgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
EST: gi|349826284|gb|FQ416089.1|FQ416089
EST:     CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGAT                         GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
genomic: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagt ... tgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
EST: gi|71875288|gb|DT024343.1|DT024343
EST:     CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGAT                         GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
genomic: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagt ... tgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT