Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctatacaagttaattttgtttttctttttcattttgaattcaaatgcatctctgttttatgttgcatttcttgatcagaagccacttattttatt...

Basic information

species Vitis vinifera
transcript Vv02s0012g02790.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035676|gb|FQ463521.1|FQ463521
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351046180|gb|FQ442558.1|FQ442558
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|110705231|gb|EE081878.1|EE081878
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|352794074|gb|FQ479316.1|FQ479316
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|26258680|gb|CA809743.1|CA809743
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351034454|gb|FQ463267.1|FQ463267
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351034375|gb|FQ463188.1|FQ463188
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351037902|gb|FQ465140.1|FQ465140
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|110364860|gb|EC928418.1|EC928418
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|110704711|gb|EE081697.1|EE081697
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351052620|gb|FQ452532.1|FQ452532
EST:     NNGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|352790200|gb|FQ481399.1|FQ481399
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351055369|gb|FQ441967.1|FQ441967
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|37190420|gb|CF609769.1|CF609769
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351036160|gb|FQ464005.1|FQ464005
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351016089|gb|FQ432044.1|FQ432044
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|110392190|gb|EC957433.1|EC957433
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|71884210|gb|DT033265.1|DT033265
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351027248|gb|FQ444497.1|FQ444497
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351044367|gb|FQ452919.1|FQ452919
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|71874794|gb|DT023849.1|DT023849
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351033642|gb|FQ462172.1|FQ462172
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351032807|gb|FQ461696.1|FQ461696
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|352798335|gb|FQ480360.1|FQ480360
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351033496|gb|FQ462147.1|FQ462147
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351039606|gb|FQ461473.1|FQ461473
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|26257869|gb|CA808932.1|CA808932
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|352790134|gb|FQ481333.1|FQ481333
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|110724316|gb|EE100035.1|EE100035
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351056762|gb|FQ443389.1|FQ443389
EST:     GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351025681|gb|FQ426695.1|FQ426695
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351054105|gb|FQ450187.1|FQ450187
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351047341|gb|FQ451853.1|FQ451853
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: gi|351044729|gb|FQ443260.1|FQ443260
EST:     AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG                         GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTCTAACAAAAAAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctatacaagttaattttgtttttctttttcattttgaattcaaatgcatctctgttttatgttgcatttcttgatcagaagccacttattttatt

- - - - - -  AAGAGA
- - - - - - - - - AAAGAA
- - - - - - - - -  AAGAAC
- - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattcaaa