Sequence
atgc intronic sequence ATGC exonic sequenceAAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatcaggaaatcactatttgataattttgatagcatatattaaacccttggtatcctttacattacagtttgaatttgctctttcctagacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os11g10050.1 (Oryza sativa), 5'ss of exon 3
AAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatcaggaaatcactatttgata-attttgatagcatatattaaacccttggtatcc--tttacattacagtttgaatttgctctttcctagacag
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AAATGTTCAATGTCCTCGTGATACTCATTTTTGGGTTTATGATGATGGTCGCTATGAGGAAGAAGGACAGAACAACATCAAAGGAAAAATCTGGGAGTCGgtatgtatctcggttaaaaaataaattagagtccgttgccatttcctcaaacttaaaagctaaatttgcttgttgctaatgatcattttattcccag----
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G016858_T01 (Zea mays), 5'ss of exon 3
AAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatcagga--aatcactatttgataattttgatagcatatattaaacccttggtatcctttac--attacagtttgaatttgctctttcctagacag
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AAATGTTCAGTGTCCCCGTGACACTCATTTTTGGGTTTATGACGATGGTCGTTATGAGGAAGAAGGTCAAAACAACATAAAAGGAAAAATATGGGAATCAgtatgtatcttgattaaaaggaattttataaccatgctatt-tctttcaaaacataagttaggtatgcttatcgccgctgatgtttcctaaactgcgaccag
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G01470.1 (Glycine max), 5'ss of exon 4
AAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatcaggaaatcactatttgataattttgatagcatatattaaacccttg-gtatcctttacattacagtttgaatttgctctttcctagacag
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AAATGTGCAGTGTCCACGTGATACACACTTTTGGGTCTATGACGATGGTCGTTATGAGGAGGAAGGTCAAAATAATATCAGAGGAAACATTTGGGAGAAGgtatttgctgactgagtatttcttggtggg---aacatcttacatcatatgagcatgtagaatat-cattgaaagagatatttactttttccctgacag
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G34300.1 (Glycine max), 5'ss of exon 4
AAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtg---catcaggaaatcactatttgataat-tttgatagcatatattaaacccttggtatcctttacattacagtttgaatttgctctttcctagacag
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AAATGTACAGTGTCCACGTGATACACACTTTTGGGTTTATGATGATGGTCGTTATGAGGAAGAAGGTCAAAATAATATTAGAGGAAACATTTGGGAGAAGgtattggctgactgaatatatcttggtgggaatatctgacatcatatg---agcatgtagaatat----caatgaaagaaatgtttactttttccttgacag
upper sequence: Vv02s0012g02570.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G31930.1 (Arabidopsis thaliana), 5'ss of exon 5
AAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatcaggaaatcactatttgataattttgatagcatatattaaacccttggtatcctttacattacagtttgaatttgctctttcctagacag
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AAATGTACAGTGTCCACGTGATACTCATTTTTGGGTATATGACGATGGACGTTATGAGGAAGAAGGGCAGAATAATATCCGAGGAAACATTTGGGAGAAGgtaaaatataataactcttcatcagatccttat-----caagtgttgctgttttaagaaatatcacg----agtttt--ttcggtttggtttaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110376471|gb|EC941535.1|EC941535EST: GTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAG GCATCAACTCGGTTCGTCTGTGCCTTGTTTTCCTTGCCAGTGCCCCATGGT
genomic: GTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatca ... tcctagacagGCATCAACTCGGTTCGTCTGTGCCTTGTTTTCCTTGCCAGTGCCCCATGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGgtgtgcatcaggaaatcactatttgataattttgatagcatatattaaacccttggtatcctttacattacagtttgaatttgctctttcctagacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA