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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGACAGATGTGAAATTAACATCTCCTCAGCTCTCCAGAGAAACTATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagtttttgttggttgccttatgtttattgttttataatttaatatctttgatccatttagtgcatttacgtctctttttcaaagcctgtgtactttg...

Basic information

species Vitis vinifera
transcript Vv02s0012g02530.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g02530.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G41570.1 (Glycine max), 5'ss of exon 3
GCATGGACAGATGTGAAATTAACATCTCCTCAGCTCTCCAGAGAAACTATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagtttttgttggttgccttatgtttattgttttataatttaatatctttgatccatttagtgcatttacgtctctttttcaaagcctgtgtactttg
|||||||||||||| | |||||| |||||||| |||||||||||| |  | |||||| |  | || |||||| | |   |||||   |||||  ||||||  ||   |  |   | |  ||| || | ||||  |  | | ||| | |   ||   |   | | | | |  |||  |||   |   | |         
GCATGGACAGATGTCAGATTAACCTCTCCTCAACTCTCCAGAGAAGCCCTCTACAAACTCGCTCTCAAAAATCTCACCATCCAAACCGTTTCCCCAAGgctcgtcaataattactcctctat-ttcactgtt--agcaatcaat-tttagaatttgt---gcgtaataatttctgctttgttatttcag---------

upper sequence: Vv02s0012g02530.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G31910.1 (Arabidopsis thaliana), 5'ss of exon 5
GCATGGACAGATGTGAAATTAACATCTCCTCAGCTCTCCAGAGAAACTATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagtt---------tttgttggttgccttatgtttattgttttataatttaatatctttgatccatttagtgcatttacgtctctttttcaaagcctgtgtactttg------------------------------------------------------
  |||||||||||| ||||||||||| || |||||||| |||||||  ||||| ||| ||||||| ||  |||| |  || || | ||| ||| ||||||||| |         ||  |  | |||  |   | | || |||| ||  |  |||   |       |||  | ||| |       | | |   ||  |   |  |                                                         
AAATGGACAGATGTCAAATTAACATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccgagagacttcttcagatgcgctgcatatttttttttttatctcgataatataagattttttttttcatatcaagacgtgtctgtgagatttcattttacaaatataagtgatggagcacttacactatttctttttttcttaaaaaataaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863651|gb|DT012706.1|DT012706
EST:     ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAG                         TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
EST: gi|110707464|gb|EE083889.1|EE083889
EST:     ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTCTCTCCAAG                         TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
EST: gi|27584900|gb|CB007595.1|CB007595
EST:     ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTCTCTCCAAG                         TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
EST: gi|294964885|gb|GW838688.1|GW838688
EST:     ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAG                         TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC