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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCTCATACAGTTATGTCAAGTTCTGTCAAGAAGCCTATTGGTGCAAAGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatcctattctcttatctgtattgacaaactaacatagaatactttttctgaaatccaattttgttacttgatcatgcataattaaagtgcattttttctttaacaaaataaccttctcggatgcag

Basic information

species Vitis vinifera
transcript Vv02s0012g01330.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110405778|gb|EC971328.1|EC971328
EST:     GTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: GTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110706113|gb|EE083724.1|EE083724
EST:     AGAGAACCGGANAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|71867456|gb|DT016511.1|DT016511
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGA-GAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|156736120|gb|EV240241.1|EV240241
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110380236|gb|EC945484.1|EC945484
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|71860448|gb|DT009503.1|DT009503
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110707454|gb|EE083867.1|EE083867
EST:     GAGAACCGGAAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGACCAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: GAGAACCGGAAAAA-GTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110400199|gb|EC966749.1|EC966749
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110732011|gb|EE106922.1|EE106922
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACA-CAAAG                         CCAAGTGGAAATCTCTATGAACAGAAACCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|22011758|gb|BQ796792.1|BQ796792
EST:     AGAGACCCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|30126699|gb|CB912038.1|CB912038
EST:     AGAAAGCTAACAACAAAG                         CCAAGTGANAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110395731|gb|EC961401.1|EC961401
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110730947|gb|EE108607.1|EE108607
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110702857|gb|EE079196.1|EE079196
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|110422737|gb|EC989065.1|EC989065
EST:     GGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
genomic: GGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT
EST: gi|71867980|gb|DT017035.1|DT017035
EST:     AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAG                         CCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAAC-ATCTGTACCTGTT
genomic: AGAGAACCGGAAAAAGTTCTGGGCTTGGTGCTAGAAAGCTAACAACAAAGgtagatccta ... tcggatgcagCCAAGTGAAAATCTCTATGAACAGAAGCCTGAAGAACCATCTGTACCTGTT