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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACAGCCGGGCAGGAAAGATTCAGGAGTCTCATTCCGAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatcctttatttctctgccatctttcttttttggcttcttgaatagtttttgcattgtagatgattattctaattgttgcctgatgggcatgtt...

Basic information

species Vitis vinifera
transcript Vv02s0012g00710.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 5'ss of exon 3
GGATACAGCCGGGCAGGAAAGATTCAGGAGTCTCATTCCGAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatcctttatttctctgc---catcttt--cttttttggcttcttgaatagtttttgcattgtagatgattattctaattgttgcctgatgggcatgtt
||||||||| || |||||| ||||||||||| | ||||| ||||| || || || || || ||||| ||||| |||| ||||||||||||||||   ||   | |   | |||   |||   |  | | | ||   ||   ||  | ||||  | |    |  ||    |  |          || | |     
GGATACAGCTGGTCAGGAACGATTCAGGAGTTTGATTCCAAGCTATATCAGAGACTCTTCCGTTGCTGTCATCGTATTTGATGTTGCAAgtatgttctctcatctccatgtgcgcacatgggtggcatgtgtgttctcactaactgcttttatactagcaacaatgcagcagaccaacagagaattgcc-----

upper sequence: Vv02s0012g00710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G169694_T01 (Zea mays), 5'ss of exon 3
GGATACAGCCGGGCAGGAAAGATTCAGGAGTCTCATTCCGAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatcctttatttctctgccatctttcttt---tttggcttcttgaatagtttttgcattgtagatgattattct-aattgttgcctgatgggcatgtt-----------------------------------------------------------
|||||| || || |||||||||||||||||| | ||||| ||||| ||||| || || || ||||| ||||||||||  |||||||||||||  |  ||| |   |  |   |   | |||| |     | | |  |   | |       || |    |  || | |   || |  |  ||  |     | |                                                            
GGATACTGCTGGTCAGGAAAGATTCAGGAGTTTAATTCCAAGCTATATTAGAGACTCTTCAGTTGCTGTCATTGTATTCGATGTTGCAAgta--atctccctctctcatacacacacattctatagaaatagttgttgtcagacgcacatcagtaacaacaatgactaggaacttatatcttttaaaggtttaagcctttaaggacataaacttttactattttgttcttacctttttgtttcatgttgtag

upper sequence: Vv02s0012g00710.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G075719_T02 (Zea mays), 5'ss of exon 3
GGATACAGCCGGGCAGGAAAGATTCAGGAGTCTCATTCCGAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatcctttatttctctgccatctttcttttttggcttctt--gaatagtttttgcattgtagatg-attattctaattgttgcctgatgggcatgtt------------------------------------------------------------------
||||||||| || |||||||| ||||||||| | ||||| ||||| || || || || || ||||| ||||||||||  |||||||||||||       || | | |||||  ||               |  ||  ||| |    | | ||   |     || | |   |    || ||     |  |  |                                                                  
GGATACAGCTGGTCAGGAAAGGTTCAGGAGTTTAATTCCAAGCTATATCAGAGACTCTTCAGTTGCTGTCATTGTATTCGATGTTGCAAgta-atctctctctgtctctctcgcacacacaaacacacattctttaggaaaaaaaatggtatcagatgcacatcagtagcaacaatgactaggaagttttatcttttaaggattaaggacataaatttttactattttattcttacctttatttgtttcatgttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046568|gb|FQ453184.1|FQ453184
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|294966167|gb|GW839390.1|GW839390
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|351042357|gb|FQ442824.1|FQ442824
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|110686975|gb|EE063981.1|EE063981
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|110723851|gb|EE099164.1|EE099164
EST:     AAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|351032522|gb|FQ458887.1|FQ458887
EST:     GAGCTACATTAGGGATCCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|351056494|gb|FQ455146.1|FQ455146
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|351015547|gb|FQ447376.1|FQ447376
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|110731534|gb|EE106031.1|EE106031
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
EST: gi|351053354|gb|FQ455690.1|FQ455690
EST:     GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATGTGATGTTGCAA                         GTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG
genomic: GAGCTACATTAGGGATTCATCTGTTGCAGTCATTGTATATGATGTTGCAAgtatgaaatc ... tttgattaagGTCGGCAATCTTTCCTAAACACTTCAAAGTGGATTGAAGAGGTTCGCACTG