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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGATTGTCAAGCTCGAAAACTTGCCTTATCTTAATCGGTTGGGTACTTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgagaatgatattgggtttatcattatttattaatattttggggtcacaatgttcttctgttacacaagcttagatatcttttatggtgcttaaatttgcag

Basic information

species Vitis vinifera
transcript Vv01s0150g00590.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00590.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G24350.2 (Glycine max), 5'ss of exon 4
AATGAGATTGTCAAGCTCGAAAACTTGCCTTATCTTAATCGGTTGGGTACTTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgagaatgatattgggtttatcattatttattaatattttggggtcacaatgttcttctgttacacaagcttagatatcttttatggtgcttaaatttgcag
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AATGAGATTGTCAAACTTGAAAATGTACCATATCTTAACCGGTTGGGTACAATGCTCATTAACAACAACAGGATTACTAGAATTAATCCCAACATTGGAGgtacagt----------ttgaactttgaactgcacattctcatgtttgtgct-ctctttccttctagt-tgtaagctactcaaaatcttactgtcatttgtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712685|gb|EE087945.1|EE087945
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|110429737|gb|EC996240.1|EC996240
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|110710820|gb|EE087309.1|EE087309
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTCGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|110707870|gb|EE084759.1|EE084759
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|32269037|gb|CD718196.1|CD718196
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|161708201|gb|FC057845.1|FC057845
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|110701540|gb|EE079224.1|EE079224
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|161714413|gb|FC064424.1|FC064424
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|110702872|gb|EE079225.1|EE079225
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
EST: gi|161708757|gb|FC060880.1|FC060880
EST:     TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAG                         AGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA
genomic: TTTGCTTATCAACAACAATAGAATTACCCGTATCAACCCCAATATCGGAGgtaagctgag ... aaatttgcagAGTACTTGCCAAAATTACACACGCTAGTTCTTACGAACAACCGGCTTGTCA