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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGCAAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgattcgcatcacattgtcacccatatatatcatgatctgtagcttattttatcggtcatttgctttcttctccgtccttttcctctagtggaatatctgtcctctttaatcattcattcatttggtttttcttcttttgtatatatttgcag

Basic information

species Vitis vinifera
transcript Vv01s0150g00460.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008967|gb|BQ794001.1|BQ794001
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|110706358|gb|EE081812.1|EE081812
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|71855708|gb|DT004763.1|DT004763
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAAT
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAAT
EST: gi|71857132|gb|DT006187.1|DT006187
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|349830947|gb|FQ418231.1|FQ418231
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|110720672|gb|EE096797.1|EE096797
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|110689340|gb|EE065480.1|EE065480
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|110382728|gb|EC947048.1|EC947048
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|71857756|gb|DT006811.1|DT006811
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|71858756|gb|DT007811.1|DT007811
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|161716374|gb|FC064899.1|FC064899
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|110382654|gb|EC946968.1|EC946968
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|33404113|gb|CF209740.1|CF209740
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|71858567|gb|DT007622.1|DT007622
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|71859446|gb|DT008501.1|DT008501
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|161717282|gb|FC069187.1|FC069187
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
EST: gi|71859081|gb|DT008136.1|DT008136
EST:     AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTAT                         CTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG
genomic: AAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgatt ... atatttgcagCTGTCTTCTCAAAACTCAGAGCATGATGAAATAGACTTTGAGTTCTTGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTGGCTTCCAATCCAAGGGGTCTTACTTGTTCGGCCACTTCAGTATGCAAATAAAGATGGTTCCAGGGGATTCTGCGGGAACTGTAACTGCTTTCTATgtgagtgattcgcatcacattgtcacccatatatatcatgatctgtagcttattttatcggtcatttgctttcttctccgtccttttcctctagtggaatatctgtcctctttaatcattcattcatttggtttttcttcttttgtatatatttgcag

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