Sequence
atgc intronic sequence ATGC exonic sequenceCCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggttagtgttttttttttcctttttcttttcctcttattgagaattgcattgaaatttgataccatgggcaattcaataataggggttaggtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g10080.1 (Oryza sativa), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggttagtgttttttttttccttttt-cttttcctctta-ttgagaattgcattgaaa--tttgataccatgggcaattcaataataggggttaggtt
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CTCATCTTGTTCCACCAGAGACTCCTCGGTCAATCTTTGTCTACTTCCGTGGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAGgtatgcacctaattaaattatgcagctgaaaagctgtaggtcttaatcaatcattgattagaaagtcttgatac-acctaccattaggttctata--ttgtgt-
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g70200.1 (Oryza sativa), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggttagtgttttttttttcctttttcttttcctcttattgaga-attgcat-tgaaatttgataccatgggcaattcaataataggggttaggtt
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CTCATCTTATTCCCCCAGACACCCCTCGGTCTATCTTTGTATATTTCCGTGGTCTGTTCTACGATACCAGCAATGATCCTGAGGGTGGATACTATGCAAGgtaaattt-tccgcttatctccaatacatcctatcatctgctcattggctcgtagcatgtggagtctgatgtttctgtatgtcctatcag------------
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G000581_T01 (Zea mays), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgta-----------tgtgggttagtgttttttttttcctttttctt------ttcctcttattgagaattgcattgaaatttgataccatggg--caattcaataataggggttaggtt------
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CTCACCTTATCCCCTTGGACACCCCTCGGTCTATCTTCGTGTACTTCCGTGGTCTGTTCTACGACACCAGCAACGATCCTGAGGGTGGTTACTATGCGAGgtaaatcatctatctgtctgcaagtgatgcagcttccctctatgtccgcatcttctttttccccagtcattcatcacaacactgcgtcctgggtctgatctcttatcattctgcatgttctacag
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G141094_T02 (Zea mays), 5'ss of exon 2
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgta-----------tgtgggttagtgttttttttttcctttttcttttcctc--ttattgagaattgcattg-aaatttgataccatgggcaattcaataataggggttaggtt
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CTCACCTTATCCCCGTGGACACCCCTCGGTCTATCTTCGTGTACTTCCGTGGTCTGTTCTACGACACCAGCAACGATCCTGAGGGTGGTTACTATGCGAGgtaaatcatatatctatttgcaagtgatgcagcttccctccactttttccccagtcattcatcacaacattgtgtccttggtctgatctctgatcattctgcatgttctatag-
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G152029_T01 (Zea mays), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgta-----------tgtgggttagtgttttttttttcctttttcttttcctc--ttattgagaattgcattg-aaatttgataccatgggcaattcaataataggggttaggtt
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CTCACCTTATCCCCGCGGACACCCCTCGGTCTATCTTCGTGTACTTCCGTGGTCTGTTCTACGACACCAGCAACGATCCTGAGGGTGGTTACTATGCGAGgtaaatcatctatctgtctgcaagtgatgcagcttccctccactttttccccagtcattcatcacaacactgcgtccttggtctgatctctgatcattctgcatgttctacag-
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggttagtgttttttttttcctttttcttttcctcttattgagaattgca--ttgaaatttgataccatgggcaattcaataataggggttaggtt-
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CACACCTAATTCCTGAAAAGACTCCCAGGTCCATTTTTGTTTACTTCCGAGGACTGTTTTATGATGTTGGAAATGACCCTGAAGGTGGATACTATGCAAGgtatgt---cttatttattacaactcacaaatgtaaaggaggggtggacatgtgaggcttttcatttatttttgcagcatgtctggttaagaccactaacttg
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggttagtgttttttttttcctttttcttttcctcttattgagaattgcattgaaatt-tgataccatgggcaattcaataataggggttaggtt--
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CCCACCTAATTCCTGACAAGACTCCCAGGTCCATTTTTGTATACTTCCGAGGACTCTTTTATGATGTTGGCAATGACCCTGAAGGTGGTTACTATGCAAGgtaggtcttattacaagtttaaaggagggggtctgagtgtgtggtcttttatttatttcatattatttcttcataagaaagc---tgacttgcatcctattac
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtg--ggttagtgttttttttttcctttttcttttcctcttat-tgagaattgcattgaaatttgataccatgggcaattcaataataggggttaggtt
| ||||||||||| || | || || ||||||| || |||||||| || || ||||||||||||| |||||||| |||||||| ||||||||||||||||| ||| | || ||| |||| || | | ||| | |||| |||| | | | |
CACACCTAATTCCTGAAAAGACTCCCAGGTCCATTTTTGTTTACTTTCGAGGACTGTTTTATGATGTTGGAAATGACCCCGAAGGTGGATACTATGCAAGgtatgtcttatttattacaacccacaaatttaaagaggggtggatatgtgaggcttttcctttatttttgcagcatgcctgcttcag-accactaacttgc--
upper sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G61840.1 (Arabidopsis thaliana), 5'ss of exon 3
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggtt------agtgttttt-----tttttcct------ttttcttttcctctta------ttgagaattgcattga-aatttgataccatgggca----attcaataataggggttaggtt--------------------------------------------------------------------
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CACACTTAATTCCCGAAAAAACTCCTCGATCCATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGTTATTATGCGAGgtaatttttttcttatgaaagttcttagctattgttcataataaatttcataaatctcctaaaacagttcataattgctttatcggtttggaattttggacataaaactcaaaaaaggaaaatttatcagactgtttttagagccatggattgttcttataatcagtgatgatgtttgtttgtcaaactggcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710032|gb|FC058089.1|FC058089EST: GGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAG AGGTGCAAGGGCAGCAGTTTGGGAGAACTTTAAGGACAACCCGCTCTTTGA
genomic: GGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggt ... tgattgacagAGGTGCAAGGGCAGCAGTTTGGGAGAACTTTAAGGACAACCCGCTCTTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCACCTAATTCCCCAAGAAACCCCTCGGTCCATCTTCGTTTACTTCCGTGGTTTGTTTTATGATGTGAATAATGACCCTGAAGGTGGTTACTATGCAAGgtatgtgggttagtgttttttttttcctttttcttttcctcttattgagaattgcattgaaatttgataccatgggcaattcaataataggggttaggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa