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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCAAATGAGACTATGAGGCTTATTGTAACAATTTCTGTTGGAGTTGTTTTTGGCTTTCTAATAGGAATATCTTTTCCAACTTTGTCAATAACTAAGgtacaattgcattgttcttagttttttgtttttgttttgtctcctctctgttatgttcatggttttgctaattattttatcttgttgtaatattgcttgagttattaaacttgtttcactatgtcaaattttggcag

Basic information

species Vitis vinifera
transcript Vv01s0137g00770.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G14040.1 (Glycine max), 5'ss of exon 3
---AAAACCAAATGAGACTATGAGGCTTATTGTAACAATTTCTGTTGGAGTTGTTTTTGGCTTTCTAATAGGAATATCTTTTCCAACTTTGTCAATAACTAAGgtacaattgcattgttcttagttttttgtttttgttttgtctcctctctgttatgttcatggttttgctaattatttta-tcttgttgtaatattgcttgagttattaaacttgtttcactatgtcaaattttggcag
   |||||||| ||| | ||||||||||||||| |||| || ||||||| | |||||||||||  | |||||| |||| |||||| | ||| | | ||   |||| ||      | |    |  || ||  |  || | |||||   |  |  ||      |   | |||   ||  |  || |     | ||||  | ||| |   |||                               
CAGAAAACCAAGTGATAGTATGAGGCTTATTGTGACAACTTTTGTTGGAATAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAA---AGgtgcagacttttagcatcttcttgttaatacttatcttgtcctttggcaattgatgataaaatgttgtcgatcttaataatggaactctaatggtactttaacaatttgcag--------------------------

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G30830.1 (Glycine max), 5'ss of exon 3
---AAAACCAAATGAGACTATGAGGCTTATTGTAACAATTTCTGTTGGAGTTGTTTTTGGCTTTCTAATAGGAATATCTTTTCCAACTTTGTCAATAACTAAGgtacaattgcattgttcttagttttttgtttttgttttgtctcctctctgttatgttcatggttttgcta-attattttatcttgttgtaatattgcttgagttattaaacttgtttcactatgtcaaattttggcag
   |||||||| ||| | ||||||||||||| | |||| || ||||||| | |||||||||||  | |||||| |||| |||||| | ||| | | ||   |||| ||      | |    |  || || |   |    ||||| | |  |  ||      |   | ||| |  | |   | ||     | ||||  ||||| |   |||                               
TAGAAAACCAAGTGATAGTATGAGGCTTATTATGACAACTTTTGTTGGAATAGTTTTTGGCTTCTTTATAGGAGTATCATTTCCAGCATTGACTACAA---AGgtgcagacttttagcatcttcttgttaggcat-accttgtcccttggcaattgatgataaaatgttgttggacttaataatggaactctaatggtgctttaacaatttgcag--------------------------

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G67850.1 (Arabidopsis thaliana), 5'ss of exon 3
AAAACCAAATGAGACTATGAGGCTTATTGTAACAATTTCTGTTGGAGTTGTTTTTGGCTTTCTAATAGGAATATCTTTTCCAACTTTGTCAATAACTAAGgt-acaattgcattgttcttagttttttgtttttgttttgtctcctctctgttatgttcatggttttgctaattattttatcttgttgtaatattgcttgagttattaaacttgtttcactatgtcaaattttggcag
 ||| |||| ||    |||| | | |||| |||    | | |||||||    ||||||||||| || ||||||||||||||| | || ||||| ||||||||  |     || |  |  | ||  | | | | |||||  |    | | | |  |  ||||  ||     | || | || || | ||  |                                                
GAAATCAAAAGATGGAATGAAGATCATTGCAACGGCATTTTTTGGAGTAACATTTGGCTTTCTGATTGGAATATCTTTTCCATCATTATCAATCACTAAGgttgccgaatcaatccttattgtcctatttctgtgtttgattagatttgtttccttatcatcattggaagatttttgttctcatatttcag-----------------------------------------------