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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTACATAGCATGGGTTTGAAATTTGGGTTTCATGTTATGAGAGGAATAAGCACACAGGCAGTCAATGCAAACACCCCTATTTTAGATAGCATTAAGgtgttgctctttcatcccatcttgataatttccttatctttttttcttgtgatgtttatataatgtcacactttgtagattttcttcaactctgaacctt...

Basic information

species Vitis vinifera
transcript Vv01s0137g00630.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G37760.3 (Glycine max), 5'ss of exon 2
GAAAGTACATAGCATGGGTTTGAAATTTGGGTTTCATGTTATGAGAGGAATAAGCACACAGGCAGTCAATGCAAACACCCCTATTTTAGATAGCATTAAGgtgttgctctttcatcccatcttgataatttccttatctttttttcttg--tgatgttta-tataatgt-cacactttgtagattttcttcaactctgaacctt----------------------------------------------------------------------------
  ||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| || ||||||||||||||||||||  | ||||  |  | ||| ||||| |||  |         |||||||  |||| |||||||   |  | |  | |  | |||||    | |  |||| ||    || | ||   ||| ||                                                                            
TCAAGTACATAGCATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTTGATACAACAATGgtattgctttttatttatgct---ataatttgattatatttttttaaggaataaaatatgctctaatggatgccccatgta-atgcattttatcttgtaacattacaagcaagagttgaggatgttgctataccttaatccaaagtttcttgttgatctcctcctctttcaatgccttag

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G30770.1 (Glycine max), 5'ss of exon 4
GAAAGTACATAGCATGGGTTTGAAATTTGGGTTTCATGTTATGAGAGGAATAAGCACACAGGCAGTCAATGCAAACACCCCTATTTTAGATAGCATTAAGgtgttgct-ctttcatcccat--cttgataatttccttatctttttttcttgtgatgtttatat-----aatgtcacactttgtagattttcttcaactctgaacctt----------------------------------------------------------------------------------------
 | |||||||||  | |||||||| |||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||  ||||||  |  ||||| ||  | | ||  | | ||  ||||||  |||  |  |    | |   |  ||  ||| ||       ||| |  || |  || ||||| |||  ||   ||  |                                                                                         
TAGAGTACATAGTTTAGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTAGATACAACAAAGgtatttttgcatttcttctatgacttgatttttttttctttacctctgtattagaaatttgtagtgatggatgccttacataatacatttttttcttctaaaaaagtacaaaatagcaggcagaatatgagaatattgttttatcttaattggaagttcttgttgaccttgatttcctcctcttgcaatttcctag

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G13960.1 (Glycine max), 5'ss of exon 3
GAAAGTACATAGCATGGGTTTGAAATTTGGGTTTCATGTTATGAGAGGAATAAGCACACAGGCAGTCAATGCAAACACCCCTATTTTAGATAGCATTAAGgtgtt----gctctttcatcccatcttgataatttccttatctttttttcttgtgatgtttatataatgtcacactttgtagattttcttcaactctgaacctt------------------------------------------------------------------------------------------------
 |||||||||||  | |||||||| |||||| |||| ||||||||||| |||||||| || || ||||||||||||||||||||  ||||||  |  ||||||||    ||  ||         ||||||  |||   |||  |||| | ||   |  || |  | |||  |  | ||  | | |  |||    | |    ||                                                                                                 
TAAAGTACATAGTTTAGGTTTGAAGTTTGGGATTCACGTTATGAGAGGGATAAGCACGCAAGCTGTCAATGCAAACACCCCTATCCTAGATATAACAAAGgtgttctttgcatttctgctatgacttgattttttttgtatacttttgtattagaaatttgaagtgatgg-atgccttacataatacctttttttttctttctaaaaatgtacaaaatggcaggcagaatatgataatattgttttatcttaattggaagttcttgttgaccttgatttcctcctcttgcaatttcctag

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G05450.1 (Glycine max), 5'ss of exon 3
GAAAGTACATAGCATGGGTTTGAAATTTGGGTTTCATGTTATGAGAGGAATAAGCACACAGGCAGTCAATGCAAACACCCCTATTTTAGATAGCATTAAGgtgttgctctttcatcccatcttgataatttccttatctttttttcttgtgatgtttata-taatgtcacactttgtagattttcttcaactctgaacctt
 ||||||||||| | ||||||||| |||||| ||||| |||||   ||||| || ||||||||| |||||   ||||| || ||  | |||| ||  || |        | | || || ||   ||| |||  | |     |     ||  || | |||| | |    |    ||     |    |     | ||| |   
TAAAGTACATAGAACGGGTTTGAAGTTTGGGATTCATCTTATGGCTGGAATCAGTACACAGGCATTCAATAACAACACACCAATACTTGATA-CACAAACGgtacatcttctaattccttcaatatagtttaataaaaaaataaaggtgaaatttatatagttaaaaaatgtattactagtaacatgttggtttgagcgga

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G26380.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAGTACATAGCATGGGTTTGAAATTTGGGTTTCATGTTATGAGAGGAATAAGCACACAGGCAGTCAATGCAAACACCCCTATTTTAGATAGCATTAAGgtgttgctctttcatcccatcttgataatttccttatctttttttcttgtgatgtttatataatgtcacactttgtagattttcttcaactctgaacctt
|||||| ||||| ||||||||||| |||||| ||||||||||| ||||||| |||||||| ||    || ||||| |  |   || | |||||  ||||||| |||    || ||    ||||  | | ||  | |  ||| |||     || |||   |  | || |  ||||  |   ||                  
GAAAGTTCATAGAATGGGTTTGAAGTTTGGGATTCATGTTATGGGAGGAATCAGCACACAAGCTTATAACGCAAATAGTCTCGTTATGGATAGTGTTAAGgtattgag--ttgattgattctttctgagtttatgaagtttgtttg----gaagttatcaacaagtgaatcttttaatggttgaag--------------