1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCAGATAACGGCCGAGTTAGAGAAAACCGGTTCCGAACCGTTTGATGCAGTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttcttttttacggatctggaagcttccttggaatatgctgttaatacttggaacactgaaaccacccccctttatgtctcctgtagtgactatct...
species | Vitis vinifera |
transcript | Vv01s0127g00720.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAAAGGATAAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAGEST: gi|34547687|gb|CF515919.1|CF515919
genomic: TTGAAAGGATAAAAA-CCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
EST: GTCGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAGEST: gi|110410367|gb|EC976048.1|EC976048
genomic: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
EST: GTCGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAGEST: gi|34548812|gb|CF517044.1|CF517044
genomic: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
EST: GTCGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAGEST: gi|71859278|gb|DT008333.1|DT008333
genomic: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
EST: GTCGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAGEST: gi|161715637|gb|FC066795.1|FC066795
genomic: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
EST: GTCGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAGEST: gi|30128124|gb|CB913463.1|CB913463
genomic: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
EST: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGA GAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
genomic: GTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttctt ... ctttttgcagGAAGAATCCTACTTTGTACGACGAGCTTGCCAAAGGCCAGAGCCCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGATAACGGCCGAGTTAGAGAAAACCGGTTCCGAACCGTTTGATGCAGTTGAAAGGATAAAAACCGGGTTCGGTCGCTTCAAGACAGAGAAATACGAgtacgttcttttttacggatctggaagcttccttggaatatgctgttaatacttggaacactgaaaccacccccctttatgtctcctgtagtgactatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccct