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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGAGGAGATTGAGAAGGCAAAACGGGAAGCACAGACACTGGAGTCAATTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctgctttcagtagatgcgtgaacatctgtttttggatcttggttaaaaggtgatgttgttcgatgcaacagggtgccctgtgtcccttttttcagtttgcaatactctccctcattatgcttgttatcagtgacaaattgctcttgtttcag

Basic information

species Vitis vinifera
transcript Vv01s0127g00560.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33401744|gb|CF207371.1|CF207371
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110687628|gb|EE065252.1|EE065252
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|34546586|gb|CF514818.1|CF514818
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110701031|gb|EE078206.1|EE078206
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGAGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|30133265|gb|CB918604.1|CB918604
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|30133845|gb|CB919184.1|CB919184
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110712094|gb|EE089319.1|EE089319
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|71876750|gb|DT025805.1|DT025805
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|30135373|gb|CB920711.1|CB920711
EST:     GGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: GGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|26264946|gb|CA816009.1|CA816009
EST:     AAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: AAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|30133776|gb|CB919115.1|CB919115
EST:     GGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: GGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110713926|gb|EE090272.1|EE090272
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGNGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110725983|gb|EE103012.1|EE103012
EST:     TTTTGGTTTCAGGGGACAGANACTTTGTGATANGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTA
EST: gi|110420058|gb|EC986319.1|EC986319
EST:     GAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: GAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|34546766|gb|CF514998.1|CF514998
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|33401797|gb|CF207424.1|CF207424
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|30129024|gb|CB914363.1|CB914363
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|37186000|gb|CF605353.1|CF605353
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110724576|gb|EE100526.1|EE100526
EST:     TTTTGGTTTCAAGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGA-CATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|27586082|gb|CB008777.1|CB008777
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|33402258|gb|CF207885.1|CF207885
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|33404148|gb|CF209775.1|CF209775
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCGAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|77578312|gb|DV217939.1|DV217939
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|33401445|gb|CF207072.1|CF207072
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|110694916|gb|EE072333.1|EE072333
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
EST: gi|77587883|gb|DV223143.1|DV223143
EST:     TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAG                         ATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA
genomic: TTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctg ... cttgtttcagATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTGAGGAGATTGAGAAGGCAAAACGGGAAGCACAGACACTGGAGTCAATTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGgtaagatctgctttcagtagatgcgtgaacatctgtttttggatcttggttaaaaggtgatgttgttcgatgcaacagggtgccctgtgtcccttttttcagtttgcaatactctccctcattatgcttgttatcagtgacaaattgctcttgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA