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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacctttttcaaagtagtcttgtttatttggcagcattgacataatttcagataatgcagttatttgtttgcagtattgagggcttcacaaattatgttatagtactgatgggagtgtcttctcactttaaatttgtttcatttcacag

Basic information

species Vitis vinifera
transcript Vv01s0026g02490.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G02970.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacctttttcaaagtagtcttgtttatttggcagcattgacataatttcagataatgcagttatttgtttgcagtattgagggcttcacaaattatgttatagtactgatgggagtgtcttctcactttaaatttgtttcatttcacag
||| || ||||| ||| |||||||||| ||||||| |||  |   |||||| |||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||  | |  ||    ||| ||| |  | | ||||| |    |  || || || | | ||   |    ||| ||     | || |   | |    |||       || |                                             
TGTGTCTAGTGAGCCAATGCCTCCTGAGTTCTCACGTACAATATCATTTGGAAATGTCACATACAATCTCTACAGTCACAGCTTCCTTCATTTTGGGCAGgtattttctatt----aagcagtgt-atgtgtttggaatagatttcacaacttgacacaagaaacaagtttattcct--ttttaaaatcgttg--aatgggaacttaat---------------------------------------------

upper sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G14230.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacctttttcaaagtagtcttgtttatttggcagcattgacataatttcagataatgcagttatttgtttgcagtattgagggcttcacaaattatgttatagtactgatgggagtgtcttctcactttaaatttgtttcatttcacag
||| |||| ||| |  |||||| |||| ||||| | |||  |    | ||| |||||| | ||||||||||| ||||||||||| || |||||||| |||||||||       | | || ||  || ||| |||     |  |   | || ||  | |  ||  |||     ||| | | | |  ||  ||   ||| | |  | ||||  ||                                         
TGTGTCAACTGAGCTTGTGCCTTCTGAGTTCTCGCGTACGTTAGCCTATGGAAATGTCTCATACAATCTCTACAGTCACAGCTTCCTCGATTTTGGACAGgtaact-----catgagagcagagtttttttttt-----ctctttgagaagttttgttcttg--gttggcccttttctgaagtttggtgtttggaaact-taatgtagttttg-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860764|gb|DT009819.1|DT009819
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|110356657|gb|EC919644.1|EC919644
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|161718808|gb|FC066355.1|FC066355
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|161712811|gb|FC062334.1|FC062334
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTG
EST: gi|110359018|gb|EC919806.1|EC919806
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|110357251|gb|EC920660.1|EC920660
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG