1 5' 3' | 2 5' 3' | 3 5' 3' |
TAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtag
species | Vitis vinifera |
transcript | Vv01s0026g02410.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|349827592|gb|FQ422460.1|FQ422460
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|27582239|gb|CB004934.1|CB004934
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|71871363|gb|DT020418.1|DT020418
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110707256|gb|EE083500.1|EE083500
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110695694|gb|EE074007.1|EE074007
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110703427|gb|EE080263.1|EE080263
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110415626|gb|EC981549.1|EC981549
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|161716131|gb|FC066487.1|FC066487
genomic: GAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110414116|gb|EC979942.1|EC979942
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110691194|gb|EE069016.1|EE069016
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|37187841|gb|CF607194.1|CF607194
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|30134974|gb|CB920312.1|CB920312
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|352785847|gb|FQ475850.1|FQ475850
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110419706|gb|EC985955.1|EC985955
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|71875792|gb|DT024847.1|DT024847
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|71867822|gb|DT016877.1|DT016877
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110400132|gb|EC966677.1|EC966677
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|71866217|gb|DT015272.1|DT015272
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110732670|gb|EE108161.1|EE108161
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|349824962|gb|FQ406534.1|FQ406534
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110365512|gb|EC928620.1|EC928620
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110426305|gb|EC992709.1|EC992709
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|71866026|gb|DT015081.1|DT015081
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|352789622|gb|FQ476220.1|FQ476220
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCGTCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTEST: gi|110717929|gb|EE094214.1|EE094214
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG