Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagcttcttaccacattagtttgcccaaatgtcatctcaaagtat...

Basic information

species Vitis vinifera
transcript Vv01s0026g01890.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g01890.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G05170.1 (Glycine max), 5'ss of exon 3
AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagcttcttaccacatt-agtttgcccaa-atgtcatctcaaagtat----
 |||||||||||||||||||| ||||| ||||| ||||| || || ||||||||  | ||||| || |||||| | |||||||| |||||||| || |||| ||| |  |  | |  || ||  ||||   |     |||||  | ||  |  |  |   |   |   |||| | ||   |    |||  | ||   | | |    
TGGTGCTCCTTGGTGGAGTTATTGGAGCGCTGGAATTACCAACACCATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatgat-ttcttcaacactttctttttctgc-----ctccttttcttcttaaaaaaaaattgaattgcatttaattaatctggtatggaagctgtgattttacct

upper sequence: Vv01s0026g01890.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G02330.1 (Glycine max), 5'ss of exon 3
AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagcttcttaccacattagtttgcccaaatgtcatctcaaa-gtat-----
 |||||||||||||||||||| ||||| ||||| ||||| || || ||||||||  | ||||| || |||||| | |||||||| |||||||| || |||| ||  |  |  | |  ||  || || |       |||   |  | ||     |  || || | | |   |  |   |     || | | || ||  || |     
TGGTGCTCCTTGGTGGAGTTATTGGAGCGCTGGAATTACCAACACCATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcat-ttcttcaacactctttttct-----gtctcctttttttttaaaaaaaaagtttataatctggtatggaagttgtgattttacctgaagtgtgttgttt

upper sequence: Vv01s0026g01890.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G14360.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagctt--cttaccacattagtttgccca-aatgtcatctcaaagtat-----------
 || || || |||||||  || ||||||||||||||||| ||||| ||||||||  | ||||| || |||||| |||||||||| ||||||||||| |||| |  |||    ||  ||   |  |      |    | | ||    | |   |   || |    | |  || ||  || |     ||| |     ||||   |           
TGGAGCCCCATGGTGGACGTATTGGAGTGCTGGCATTACTAATACCATTGGTCCTGCTATGGGCATTGAAGCTTTAAAGTATATTAGTTACCCAGCTCAGgtaaattaggcattgttagtgtaataaaaacctcatttttcttgattatggttgatagttgaggtaataacctttcttgggaagtaatattgatgcaaaacttgcttcttgcag

upper sequence: Vv01s0026g01890.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G02810.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagcttcttaccacattagtttgcccaaatgtcatctcaaagtat-----
 || || || |||||||  || |||||||| |||||||| ||||||||||||||  ||||||| || |||||  | |||||||| ||||| ||||| |||| |       ||||  |||||      | |  |  |||   | ||  ||    | | | ||||||    | |  |  |   || | | ||||     |||     
TGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgta-------actttatacctcatcagtagtaatactcagattatggtttatgaactgtttcttaggtaaatgatgggttgaattctgatcttgct-tattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351036826|gb|FQ459348.1|FQ459348
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352786451|gb|FQ479060.1|FQ479060
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351055698|gb|FQ452163.1|FQ452163
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351036783|gb|FQ457496.1|FQ457496
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351035500|gb|FQ463345.1|FQ463345
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032227|gb|FQ460484.1|FQ460484
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351038988|gb|FQ457663.1|FQ457663
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351036168|gb|FQ464013.1|FQ464013
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351044156|gb|FQ452829.1|FQ452829
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351016418|gb|FQ423845.1|FQ423845
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032288|gb|FQ461541.1|FQ461541
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351053959|gb|FQ441725.1|FQ441725
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351054140|gb|FQ450222.1|FQ450222
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351039531|gb|FQ461398.1|FQ461398
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351056081|gb|FQ453542.1|FQ453542
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351052635|gb|FQ452547.1|FQ452547
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|110702475|gb|EE081231.1|EE081231
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032936|gb|FQ461825.1|FQ461825
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352799046|gb|FQ480895.1|FQ480895
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351046246|gb|FQ442624.1|FQ442624
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351044120|gb|FQ452793.1|FQ452793
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351052169|gb|FQ450739.1|FQ450739
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351035854|gb|FQ463699.1|FQ463699
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351044933|gb|FQ449187.1|FQ449187
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351039907|gb|FQ464945.1|FQ464945
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032851|gb|FQ461740.1|FQ461740
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351025121|gb|FQ433538.1|FQ433538
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|349808285|gb|FQ403472.1|FQ403472
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|71856622|gb|DT005677.1|DT005677
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351037946|gb|FQ465184.1|FQ465184
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351034699|gb|FQ458056.1|FQ458056
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351038871|gb|FQ457546.1|FQ457546
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351039167|gb|FQ457842.1|FQ457842
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351057147|gb|FQ450854.1|FQ450854
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|349833245|gb|FQ416623.1|FQ416623
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352786716|gb|FQ479923.1|FQ479923
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351045999|gb|FQ441382.1|FQ441382
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351038382|gb|FQ461074.1|FQ461074
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351042885|gb|FQ451179.1|FQ451179
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351043239|gb|FQ443960.1|FQ443960
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351044055|gb|FQ452728.1|FQ452728
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351039174|gb|FQ457849.1|FQ457849
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352789934|gb|FQ479544.1|FQ479544
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351046457|gb|FQ453073.1|FQ453073
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032986|gb|FQ461875.1|FQ461875
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351051856|gb|FQ455270.1|FQ455270
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|349833159|gb|FQ416537.1|FQ416537
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|110693577|gb|EE069940.1|EE069940
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351054637|gb|FQ456834.1|FQ456834
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351055743|gb|FQ452208.1|FQ452208
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351052982|gb|FQ456589.1|FQ456589
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351023989|gb|FQ423412.1|FQ423412
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351047228|gb|FQ454839.1|FQ454839
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351037336|gb|FQ460535.1|FQ460535
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351042847|gb|FQ451141.1|FQ451141
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351043397|gb|FQ451449.1|FQ451449
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352798359|gb|FQ480384.1|FQ480384
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|29785990|gb|CB343382.2|CB343382
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351047225|gb|FQ454836.1|FQ454836
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|349814707|gb|FQ409930.1|FQ409930
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351048553|gb|FQ448827.1|FQ448827
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351042707|gb|FQ451122.1|FQ451122
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|349810777|gb|FQ403020.1|FQ403020
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351036420|gb|FQ457133.1|FQ457133
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351026925|gb|FQ436578.1|FQ436578
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351048101|gb|FQ442071.1|FQ442071
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351037142|gb|FQ456975.1|FQ456975
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351054788|gb|FQ462818.1|FQ462818
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352786776|gb|FQ481151.1|FQ481151
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351037430|gb|FQ460629.1|FQ460629
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351043110|gb|FQ451283.1|FQ451283
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351031561|gb|FQ459818.1|FQ459818
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351034733|gb|FQ458090.1|FQ458090
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351053917|gb|FQ441683.1|FQ441683
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351030061|gb|FQ430803.1|FQ430803
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032621|gb|FQ462335.1|FQ462335
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351012733|gb|FQ430296.1|FQ430296
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351038770|gb|FQ464636.1|FQ464636
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351033504|gb|FQ462155.1|FQ462155
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351041710|gb|FQ455920.1|FQ455920
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351054038|gb|FQ441804.1|FQ441804
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351032204|gb|FQ460461.1|FQ460461
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352790397|gb|FQ478037.1|FQ478037
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351031612|gb|FQ459869.1|FQ459869
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|352786232|gb|FQ478843.1|FQ478843
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG
EST: gi|351042274|gb|FQ442741.1|FQ442741
EST:     GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAG                         GTCCTGGCGAAATCCTCAAAAATGATTCCAG
genomic: GTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttact ... tttatggcagGTCCTGGCGAAATCCTCAAAAATGATTCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagcttcttaccacattagtttgcccaaatgtcatctcaaagtat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct