1 5' 3' | 2 5' 3' | 3 5' 3' |
GCATGTCACCCGAGGTGAATATGATGAAGATTCACGTTACCTGGAGACCAAGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctggttttcctctgtctgttctgacatgtggcttgatttttaaggattgcaaataaatgtgttacataataatttgatgaattggattccaatc...
species | Vitis vinifera |
transcript | Vv01s0026g01860.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGACACTTACAATCGGCCAATTTAAGCTTGGAGTATGCCATGGTCATCAG GTTATTCCCTGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGEST: gi|77578969|gb|DV218316.1|DV218316
genomic: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctgg ... caatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTG
EST: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAG GTTATTCCCTGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGEST: gi|110390957|gb|EC955907.1|EC955907
genomic: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctgg ... caatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTG
EST: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAG GTTATTCCCTGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGEST: gi|351016741|gb|FQ424168.1|FQ424168
genomic: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctgg ... caatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTG
EST: AGACACTTACAATCGGTCAATTTAAGCTTGGGGTATGCCATGGTCATCAG GTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGEST: gi|349829968|gb|FQ420228.1|FQ420228
genomic: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctgg ... caatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTG
EST: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAG GTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTG
genomic: AGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctgg ... caatctgaagGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGTCACCCGAGGTGAATATGATGAAGATTCACGTTACCTGGAGACCAAGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGgtctgtctggttttcctctgtctgttctgacatgtggcttgatttttaaggattgcaaataaatgtgttacataataatttgatgaattggattccaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaattgga