Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag

Basic information

species Vitis vinifera
transcript Vv01s0026g01080.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g12580.1 (Oryza sativa), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaattt-cctgactgatac-tgacagccatatattgtttataccatag
 || || |||||||||||||| ||||||||||| ||||| ||||| || ||||| ||| | ||||||||| | || || ||||| || || || |  ||||||||  ||       |   |   |||| |||   |||   ||  |  |   || | |||||    |  ||     ||   ||||
CTACGATGAATGCTTGAGAAAGTATGGAAATGCAAATGTATGGAAATACTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAACCAGgtttg--ttacttgactaattgcggtttaactgatataggcttatccaatatatgcctgaca--tgtgaatcacccattttatag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g37660.1 (Oryza sativa), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag----------------------
 ||||||||||||||  | || ||||||||||| ||||| |||||||| || || ||| | ||||||||| | || || ||||| ||  | || |  ||||||  || | |   ||     | | | ||   || |||       |||      ||        ||||| |  ||    | |                       
CTATGACGAATGCTTACGGAAGTATGGAAATGCAAATGTTTGGAAGTACTTCACGGACTTGTTTGATTATTTGCCTCTCACAGCTCTTGTAGAAAACCAGgtt--agctctttttgccaaatgtttgttctattaatatggacattgaactcagcttgtccatgtatatggcatacctgacaagaggaaaaatttcattttgtag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G133464_T01 (Zea mays), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttt--tactttgataaatttcctgactg-atac---tgacagccatatattgtttataccatag
 ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||| | ||||||| | | || || ||||| || || || | |||||| ||    |  ||  ||| ||||| ||  |||| | |||   || |||| |  || |   |||||       |   |  ||     ||
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTCTGGAAGTATTTTACAGACTTGTTTGATTTTTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgca--gctcaattttgttatggttgatactgttataggcttgctgaatatatccctttgacatttgagaaacatccattttgcag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G038195_T01 (Zea mays), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttt--tactttgataaatttcctgactg-atac----tgacagccatatattgtttataccatag
 ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||| | ||||||||| | || || ||||| || || || | |||||| ||     ||    ||| ||||| ||  | || | |||   ||  ||| |  |||     | |||       |   |  ||  || ||
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTATGGAAGTATTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatg---catcttaatttgttatggttgatgctattataggcttgttgaatatatatgcctttacatttgagaaacatccatttcacag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G119546_T01 (Zea mays), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttg------agttgt-ccatgtttcttatgttttactttgataaatt-tcctgactgatactgaca---gccatatattgtttataccatag
 ||||| ||||||||| | |||||||||||||| ||||| |||||||| ||||| ||| | ||||||||| | || || ||||| || || || | |||||||||       ||| |  | |    | |   | |||  |||  |   | | ||| ||    ||| ||   ||   | | | |  ||     ||
CTATGATGAATGCTTGCGGAAATATGGAAATGCAAATGTGTGGAAGTACTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtttgttctctggttatgtcgtagcgcattgatattaacttgtgattctgttctgtctatacctggcaaaagctgaaaaat-tccattttgcag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag
 ||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||||||| |||| || || |||||||||||||||||||||||||||    ||||| |  |   || | | |||  |||||        || |   ||   |  |  ||| |||||     
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgttgcagaatgttca-tctgactaatttt-------atgccagcatttaacttctgtgtatacag---

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag
 |||||||||||||||||||| ||||||||||||||||||||||| |  || |||||| | ||||||||| |||| || || ||||| |||||||||||||||||||||    ||||| |  |  | || ||||||     ||  || | |   || ||| || | |||  |  |        
CTATGACGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTCACCGACTTGTTTGATTATTTACCTCTGACTGCCCTTATTGAGAGTCAGgtttgagttaaatatgttgcaca-atgtttctttgactgcctta-tgccagtgtctaacatccttgtatgttacag-------

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G17100.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag
 ||||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||| | ||||||||| | || || || |||||||||||||||||||||||||||    ||||| |  |    ||| | |||  |||||  || | |    | ||  | |  |  ||| |||  ||   
CTATGATGAATGCTTGAGAAAATATGGAAATGCGAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTGCCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaa--atgttgcagagtggtta-tctgactaattttatgccggcctttaacttctacct-ctgtgtattgcag--

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag
 || || |||||||||||||| ||||||||||||||||||||||| |  ||||||||  | ||||||||| |||| || || ||||| |||||||||||||||||||||    ||||| |  |  | ||  | |||  |  ||  || | |   || ||| || | |||  |  |        
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcaga-atgtttttctgactacctta-tgccagtgtctaacatccttgtatattacag-------

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G59830.2 (Arabidopsis thaliana), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttat-gttttactttgataaatttcctgactg--atactgacagccatatattgt-ttataccatag
|||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||| |||||||| || |||||||| ||||| |||||||||||| ||| ||| | ||    |  |  || ||   |    | ||   | |||     |||      |||  | ||| ||     | ||
TTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGTGTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGTCAGgttcgagctgttcttgccagtcgtcattgtatcatccgtagttgtttcacttccgcacttttcttcatcaactgtattccgtgacag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag
|||||||||||||||||| || || |||||||| || ||||||||||||||||| |||||||| |||||||| || ||||| |||||||| |||||||||||| ||| ||| |   ||||| | |||    ||||||| || |  |      ||| |         |       ||    |||
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgttc---tttctca-gttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G69960.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgt--ttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag-------------
|||||| ||||| ||||| |||||||||||||| ||||| |||||| | || || || |||||||||||||| || |||||||| || ||||||||||||||  || |       |||    || |    ||| ||    ||| || |  ||| | |||           |||  || |  |                
TTATGATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTGATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGgtatttaaaaaactaatgagcgtttt-cactaccttagacaatctcttctctgtttctgctgttttggacttgactacagaactctttttttctgtag

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ18262 (Selaginella moellendorffii), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttac-tttgataaatttcctgactgatactgacagccatatattgtttataccatag
 || ||||||||| | || ||||||||||| || |||||||||||||| || |||||  | || |||||  |||| || || || || |||||||  || ||   |||| ||  | |||||  |     |  ||||| |  ||  | | ||   |                             
CTACGACGAATGCCTTAGGAAATATGGAAACGCGAATGTCTGGAAGTACTTCACCGATTTGTTCGATTACTTACCACTCACGGCGCTGATTGAGAACCAAgt--aagtt-tctgtttttctctttcgcaaggtttgaaatgttcgcgggctcgcag----------------------------

upper sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ22002 (Selaginella moellendorffii), 5'ss of exon 3
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttac-tttgataaatttcctgactgatactgacagccatatattgtttataccatag
 || ||||||||| | || ||||||||||| || |||||||||||||| || |||||  | || |||||  | || || || || || |||||||  || ||   |||| ||  | |||||  |     |  ||||| |  ||| | | ||   |                             
CTACGACGAATGCCTTAGGAAATATGGAAACGCGAATGTCTGGAAGTACTTCACCGATTTGTTCGATTACTTGCCACTCACGGCGCTGATTGAGAACCAAgt--aagtt-tctgtttttctctttcgcaaggtttgaaatgtttgcgggctcgcag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415724|gb|EC981655.1|EC981655
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|56409705|gb|CX017957.1|CX017957
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|351022591|gb|FQ447113.1|FQ447113
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|110427156|gb|EC993587.1|EC993587
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|77582165|gb|DV220043.1|DV220043
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|110375012|gb|EC939964.1|EC939964
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|110424605|gb|EC990972.1|EC990972
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
EST: gi|30321454|gb|CD004716.1|CD004716
EST:     TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAG                         GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT
genomic: TTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttg ... tataccatagGTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAAT