1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAATGGGTAACAGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagcagtaatgtattgaagaaaagaaaattgacaacatgcacaaaagcagtatcgtttataatttcacttgaatttctagtacggttgtatcca...
species | Vitis vinifera |
transcript | Vv01s0026g00920.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|18458423|gb|BM436701.1|BM436701
genomic: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|71859638|gb|DT008693.1|DT008693
genomic: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|30322099|gb|CD005361.1|CD005361
genomic: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|27578697|gb|CB001392.1|CB001392
genomic: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|27581381|gb|CB004076.1|CB004076
genomic: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|30322426|gb|CD005688.1|CD005688
genomic: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|34545798|gb|CF514030.1|CF514030
genomic: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|30323405|gb|CD006667.1|CD006667
genomic: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCAEST: gi|28970697|gb|CB349730.1|CB349730
genomic: GGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
EST: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAG GGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
genomic: ATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagc ... tgtgttgcagGGAGAAGAAATTATAGTGGTAATGCCCTGGGATGAATGGTGGGAATTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATGGGTAACAGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagcagtaatgtattgaagaaaagaaaattgacaacatgcacaaaagcagtatcgtttataatttcacttgaatttctagtacggttgtatcca
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagca