Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag

Basic information

species Vitis vinifera
transcript Vv01s0011g06600.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G39170.1 (Glycine max), 5'ss of exon 4
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag
| | || ||| | || ||||| |||| ||||||||| |  || ||    || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||     |   | ||   ||  |       || ||       | |  |||   |||   |   | |    |  ||||   |      || |     | |                                                                    
GTTGGCTGGGTTGGCATTCAAAAGGAGGTGGCAGAATAGAAGGAAACAAGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacaagaaaatacttgcatgttctgccactgaaattttagc----attgttgaaaattgtttttttttc-caagagtctagcactaataatataaagagaaa--------------------------------------------------------------------

upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G40840.1 (Glycine max), 5'ss of exon 3
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacata-acgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag
| | || ||| | || ||||| ||||  |||||||| |  || ||    || ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | ||           |         |||    |  |||   | |  | | ||| |||    ||||     |  || ||||    | ||   |||  || ||                                                                   
GTTGGCTGGGTTGGCATTCAAAAGGAGATGGCAGAATAGAAGGAAACTGGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGgtacacacacaaaaaaaaaagaaaaaaacacttgcatgttctgccattgaaattttagcattgccgaaaatt----gttttttaag---agtctagcactaata-ata------------------------------------------------------------------

upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G04940.1 (Glycine max), 5'ss of exon 3
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggc-taaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag
| | || ||  | || ||||| || |||||||| ||||  || ||    ||||| |||||||||||||| |||||||| |||||||| || || ||||||||| ||| | |        |||  |  | ||| |            ||  |   |||| |||    |  |    |  |    ||| |   |  ||||     | | || || ||                                                            
GTTGGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGAAGGAAACAAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtatata-cacttcaaaa-cacttttttttttaa------------tttttcaagagcattgtatattgagtagtatgaaattaatcagagttttaattgattgcgtgtttgtgaag---------------------------------------------------------

upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G33280.1 (Glycine max), 5'ss of exon 1
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacata-acgccctggcttcaccctc--ctctttgagcatattgcttctt-acttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag
| |||| ||  | || ||||| || |||||||| ||||  || ||    ||||| || |||| |||||| |||||||| |||||||| || || ||||||||||||| ||  |    | |     |    | ||  ||   |||| || || | |  |      |||    ||||    |  || |||        || |     ||  ||  ||  |                                                           
GTTAGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGAAGGAAACAAGAGGGAAAACCTTTTGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtacatacacttcaaaacatttttattaatttttcaagagcattgtttgttgagtaatatagtatggaactaatc---agagttttaa--------ttgattaattatgtgtgttcag-----------------------------------------------------------

upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S34_308V6.1 (Physcomitrella patens), 5'ss of exon 3
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttc---taagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag
||| || || || || |||||| |||| ||||||    || | || || |  || |||||||  |||||||||||||| ||||| |||||||||||||||||||||           | ||  |   ||| | ||   |         | ||   |   ||     ||||| | || |  |   |||| ||  |   ||||   |   || | || |   |  |    |  |  ||    ||| || || |  |                      
GCTCGCTGGTCTCGCATTCAAGCGGAAATGGCAGCTTGAGCGTAAAGCAGCTGGAAAGCCTTGGGACAAGCCCAACATGGTCACCGGTGCTAATGTTCAGgtacatt---------ttccaaacctatctctaagggaaa--------aattaaaaaaattaaaa-aaatcaacggacagcgattaagaccaag--gaaaccctttgttgttattagaaattcacttacaat--atcagcgttcggtttgtgtag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352791108|gb|FQ477435.1|FQ477435
EST:     AGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAG                         GTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTG
genomic: AGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacg ... gtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTG