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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGgtttgtgaccatgtcctcagaattggcgcagtatgatgcagaatttatgtgttgtctttgctctcattagtttgaatttgttcag

Basic information

species Vitis vinifera
transcript Vv01s0011g06560.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g27580.2 (Oryza sativa), 5'ss of exon 3
TTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGgtttgtgacc-atgtcctcagaattggcgcagtatgatgcagaatttatgtgttgtctttgctctcattagtttgaatttgttcag
|||||| | || |||| ||| ||||| || ||  | ||  ||||  |  | || | ||||||||| ||||| |||||||||||||||||||| || |||||||||  |   ||    |            |      |   |   | ||  ||      ||     |||  |||     | | |||
TTTGAACAGAGCATAACTGCAAGAAGAGTTTTGTTATTCGTAGCAGTACTTGGGATGTGCATGCTCATTGGAGATGGCATACTTACTCCTGCTATTTCAGgtttgctatttataaattacatgccaatctaac-cattcttgtgatcata-gtgagacctgacagtatttctttacccctttacag

upper sequence: Vv01s0011g06560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g36340.1 (Oryza sativa), 5'ss of exon 3
---------------TTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGgtttgt-gaccatgtcct-cagaattggcg--cagtatgatgcagaatttatgtgttgtctttgctctcattagtttgaatttgttcag
                | |   |  | ||  |  |        | | | | ||   ||| || | | | ||    | ||   ||       |       ||    |  |       ||||  || |||  | |     ||  | |  || | ||||  |  || ||    |  | ||| ||   |  |        | || |||
GGCATGTGCATGCTCATCGGCGATGGCATCCTCACTCCTGCAATCTCAGTCTTGTCAGCGAT-TGATGGACTCAGAGGCCCGTTCCCATCCGTCAGTAAACgtaaggcacactgactttgcagaacataacatatctgatcagtgatcaatgtgataaatcatataccgatgttgttttctgataaaaaacaattgtcgtgcag

upper sequence: Vv01s0011g06560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G088964_T01 (Zea mays), 5'ss of exon 3
TTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGgtttgtgaccatgtcctcagaa----ttggcgcagtatgatgcagaatttatgtgttgtctttgctctcattagtttgaatttgttcag
|||||   ||| ||||  |||||||| | | | || || ||  | ||  | || | ||||||||| ||||| ||||||||||| |||||||| || ||||||||||  | |||      | |    ||       | |||| |      |||||||    |   |  | | |       ||   |||||
TTTGAGCGAAGCATAACAGCCAGAAGAGCGCTGCTGTTCATGTCAATACTGGGAATGTGCATGCTCATTGGGGATGGCATACTCACTCCTGCCATTTCAGgtttgtccctatgcttaaggcagtctttttttttctgtgatcccagcgatatgtgtcaattcatcctttactttacctcatcgtttcag

upper sequence: Vv01s0011g06560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G09720.1 (Glycine max), 5'ss of exon 2
TTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGgtttg-tgacca-----tgtcctcagaattggcgcagtatgatgcagaatttatgtgttgtctttgctctcattagtttgaatttgttcag-------------------------
||  ||| |||  |  ||||  | ||| | || || ||| | |||||||| || || |||||||| ||||||||||| |||||||| |||||||| ||||||||| ||||       | |        ||   ||    |     | || ||   ||   | |||| ||||  |    ||  ||| ||||                          
TTCCAAACAAGCGTGGTTGCTCGTAGGCTCTTGCTCTTTGTTGCTATGTTGGGTACTTGCATGCTTATTGGTGATGGTATACTTACGCCTGCAATTTCAGgtttggtgacaggcttttttttcttccttttttgccacctttcagaaaagttcgatgccttttttg-tctctctgaaatggttttattcaactttgcttgatttgtttgttttcag