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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattccccattcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccactccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g06310.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g06310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g13520.1 (Oryza sativa), 5'ss of exon 4
ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattccccattcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccac---tccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag
 ||  || | || ||||| ||       ||    |  | | | |  | | | || |||||||| || ||||||||| ||||||||||||| || |||||||||  | |   | |||  | |  || || | ||  |||| | | |  ||||    |  |      | |      |    ||   |    | ||    ||     |       |        |||     ||||   | |||   | |   ||||   |  ||                          
CCTCCTCACCGTCTGGGTCCGCGCCGACCTCGCCCGCTTCGTCCGCCGCGCCAGCGTCTCCTGCGTCGGCTGCGGCGTCATGGGCTGCCTCGGCAACAAGgtaccc-tacccctgacct-atcattccgc-cattgctcaccacacgccacg-cgcgcgcgcgcgcgcggcgagccgcgccgcgagg--ggaatgaattgtacctaacacgcacggcatcgatggatcgccacgggtgcatggctgtgcctggacg-tgcag--------------------------

upper sequence: Vv01s0011g06310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g23140.2 (Oryza sativa), 5'ss of exon 4
ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattccccattcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccactccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag
  | || ||||| |||||  |||| | ||||   |||||||| || || |  | ||| || ||||| || |  ||||||||||||| ||||||||||||||||| ||    ||  ||   |  |||  | | ||     |||           |||        |   || ||||| ||||||  | ||   | |  |   ||   |                                                                              
CTTTATGTCAGTCTGGGTGAGAAGCAATCTTAGGCCATACATTCACCATCTGAATGTGTCTTGTGTTGGTTCAGGCATCATGGGCTACCTAGGGAACAAGgtatgca----caaaatgcaaacatcagaagtaagagggtca-----------taccttccgtatgtgcaatcacataaccat-gcatttggatatgtggattgcag------------------------------------------------------------------------------

upper sequence: Vv01s0011g06310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G151921_T01 (Zea mays), 5'ss of exon 4
ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattccccattcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccactccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag
  | |  || || ||||   |||| || |||   ||   ||| |  ||||    ||  || ||  | ||||  |||||||||||||||||||||||||||||| | | |  | | |  | | |     ||| | |      |   |  |||  | |  |  ||     |||| |    | | |||||| ||      |  | | ||  |||     ||  ||||                                                             
CTTCACGTCGGTGTGGGCGAGAAGCAGCCTTAGGCCGCTCATCCGTCACCTGGATGCGTCGTGCATCGGCTCGGGCATCATGGGCTGCCTAGGGAACAAGgta-ataagcgcgtaagataatacatggacggacacaagagagaggcacacc-tgcgtgcgaagagatcattaattcgatcgtcacctgga------tggcgtgtgtgggttgctttgcgcatgcag----------------------------------------------------------

upper sequence: Vv01s0011g06310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G178279_T01 (Zea mays), 5'ss of exon 3
ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattccccattcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccactccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag
 ||| || | || ||||| ||       || |  |  | | | |  | | | || |||||||| || ||||||||| ||||||||||||| || ||||||||    |   | |  | ||     ||| |      | |  |    | |  |    | ||  ||    | | | || || | ||    |     ||                                                                                          
CCTGCTCACGGTGTGGGTGCGCTCCGACCTCCGCCGCTTCGTCCGCCGCGCCAGCGTCTCCTGCGTCGGCTGCGGCGTCATGGGCTGCCTTGGCAACAAGgtgaggagtaataatacttggtcctccgaaatggtggtggccgccgccggctgcgc-aggcaaaaagcaactgacgaagcgatggaataatggcag-----------------------------------------------------------------------------------------

upper sequence: Vv01s0011g06310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA0048S00350.1 (Glycine max), 5'ss of exon 4
ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattccccattcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccactccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag
| |||| ||||| |||| |   ||    |||| ||||| ||| || || ||||||||||| ||||| || || ||||||||||||||| |||||||||||||  || |   ||      |    |  ||        ||  | |    ||  |   || |||   |  || |   | |  |||   | | | |    ||| ||||| |                                                                             
ATTGATATCAGTATGGGCTAAGAGAGACCTTCGTCCATTCATTCAACATCCAAGTGTCTCATGTGTCGGATGTGGCATCATGGGCTGCTTAGGGAACAAGgtg-acctaaccaaaccccccttttttcatat-----tcatattcattcattactttaattagcgcttcaattcaacatacatg--catcatatctatttgttttgca-----------------------------------------------------------------------------

upper sequence: Vv01s0011g06310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G00270.1 (Glycine max), 5'ss of exon 4
ACTGATCTCAGTTTGGGTTCGAAGTAGTCTTCTTCCATACATACAGCACCCAAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGGAACAAGgtatacatgtacatgatttcacaatcccacgcaaagctctcaatagaccacaatactagttaattcccca--ttcacaaaaccatcaccttgaaacacttttcttttggaggtgatcatgatcatgatcatccactccataattttaattggaaaataaagccaccttgtatgaccttggtttgcag
| |||| ||||| |||| |   ||    |||| ||||| ||| || ||  ||||||||||  |||| || || ||||||||||||||| |||||||||||||  || |   ||      | |||    |  || |    | | |  |  |  ||| || |||   |  ||  |  ||| || |||||  |    | |  | ||| ||                                                                                
ATTGATATCAGTATGGGCTAAGAGAGAACTTCGTCCATTCATTCAACATTCAAGTGTCTCACGTGTCGGATGTGGCATCATGGGCTGCTTAGGGAACAAGgtg-acctaaccaaa----cgcaactttattcatattcattacttta--attatattaattaccacttcaattcaacacaagcatcatatatgtatatctatctatt--------------------------------------------------------------------------------