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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATGACTACAGAGGAAAAGTTGAGGCTCAACTGAGTCCCATTCTTACCAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggctaacgaaagtctcctttcgtgctttctgtggcaaaacccactttcttgttggggtattattattaatatctttcactttcttgttgcgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g06290.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56688100|gb|CX126003.1|CX126003
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688146|gb|CX126049.1|CX126049
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGGGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688532|gb|CX126435.1|CX126435
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACGCCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|110361763|gb|EC925259.1|EC925259
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688821|gb|CX126724.1|CX126724
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688240|gb|CX126143.1|CX126143
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|161715966|gb|FC068755.1|FC068755
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|30330531|gb|CD013793.1|CD013793
EST:     CTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|30128027|gb|CB913366.1|CB913366
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|30127523|gb|CB912862.1|CB912862
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|110427573|gb|EC994020.1|EC994020
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688741|gb|CX126644.1|CX126644
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|30125391|gb|CB910730.1|CB910730
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|349811174|gb|FQ406162.1|FQ406162
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|71867743|gb|DT016798.1|DT016798
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|161717827|gb|FC064740.1|FC064740
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|161719167|gb|FC065431.1|FC065431
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|30126050|gb|CB911389.1|CB911389
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688831|gb|CX126734.1|CX126734
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688837|gb|CX126740.1|CX126740
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688383|gb|CX126286.1|CX126286
EST:     CAAGATGGACAGCTGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688239|gb|CX126142.1|CX126142
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTACTTTGTAGGTACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|27586836|gb|CB009531.1|CB009531
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
EST: gi|56688885|gb|CX126788.1|CX126788
EST:     CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAG                         AAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT
genomic: CAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggcta ... tgttgcgcagAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCATGACTACAGAGGAAAAGTTGAGGCTCAACTGAGTCCCATTCTTACCAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGgtaaaggctaacgaaagtctcctttcgtgctttctgtggcaaaacccactttcttgttggggtattattattaatatctttcactttcttgttgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG