Sequence
atgc intronic sequence ATGC exonic sequenceATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaacccttccatttttctttataagttttgtgtgtgtgtgttttgcagttttgtcctaacaattgttttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 3
ATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaacc-cttccatttttctttataagt---tttgtgtgtgtgtgttttgcagttttgtcctaacaattgttttttgcag
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CTTACTGAAGAATTGTCAAGGGTTGAGGGGAAGCTGAAGTTAACAGAATCTCTTCTAGAAAGCAAAgtaatgcttgaagcctctatcaagcttagcgaggagtaaatttctgaggttacgtggtgtgtttttactaaactggatatttcttgcag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 3
ATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaacc-cttccatttttctttataagttttgtgtgtgtgtgttttgcagttttgtcctaa-caattgttttttgcag
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CTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAGgtattgcatgaagcctctatcaactttaggaaatagtcattttcccaggttaggtggtatgttttctgaatcgaatatttctggcag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 3
ATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaacc-cttccatttttctttataagttttgtgtgtgtgtgttttgcagt-tttgtcctaacaattgttttttgcag
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CTTACTGAAGAATTGTCAAGGGTTGAGGGGAAGCTGAAATTAACAGAATCTCTTCTAGAAAGCAAAgtaatgcttgaagcctctatcaagcttagtgagaggtaaattttttaggttacgtggtgtgtttaataaactgggtatttcttgcag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 3
ATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaac--ccttccatttttctttataagttttgtgtgtgtgtgttttgcagttttgtcctaacaattgttttttgcag
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CTGACAGAAGAACTGTCAAAGGTTGACGAGAAGCTAAAACTAACGGAGTCTCTTCTAGAAAGCAAGgtatttcttgaagcctccatcaactttagtaaatagtcattttcccaggttaggtggtatgttttctgaattaaatatttctggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691687|gb|EC982203.1|EC982203EST: CAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAG AATCTCGAGATCAAGAAAATCAATGATGAAAAGAAGGCCTCCATGGCTGCT
genomic: CAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatg ... ttttttgcagAATCTCGAGATCAAGAAAATCAATGATGAAAAGAAGGCCTCCATGGCTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTACTGAAGAACTGTCAAAGGTGGAGGAGAAGCTTAAGTTAACAGAATCTCTTCTAGAAAGCAAGgtattgcatgaaacccttccatttttctttataagttttgtgtgtgtgtgttttgcagttttgtcctaacaattgttttttgcag
- - - - - - - - - - GGTGGA
- - - - - - - - - - GTGGAG
- - - - - - - - - - - TGGAGG
- - - - - - - - - - - GGAGGA
- - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG