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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAACTGTTCTGTGGTCAGGACTATCCGGATAATCCACCAACTGTGAAGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaattttactttcaagaatttttatgctgtggtatgtttgataataagcttatgatggtcaaattaccag

Basic information

species Vitis vinifera
transcript Vv01s0011g05630.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 3
GTTGAAACTGTTCTGTGGTCAGGACTATCCGGATAATCCACCAACTGTGAAGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaattttactttcaagaatttttatgctgtggtatgttt-gataataagcttatgatggtcaaattaccag--------------------
||| || ||||| |||| |   || ||||| ||||| ||||| |||||    |||||||||||||| |||||||| ||||| || || ||||||||| ||||        ||  |||       || ||   ||     |     |  |||      ||||| ||     ||  |                     
GTTAAAGCTGTTTTGTGATACAGATTATCCAGATAAACCACCGACTGTCCGATTCCAGACTCGGATCAATATGACATGTGTGAACCAAGAAACTGGATTGgtactcgtgctttttttttgtttcttatagcttgcaacctaccaaggcaatttatgaatgatagtaggcctattacttaactagcaccttttctag

upper sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 3
GTTGAAACTGTTCTGTGGTCAGGACTATCCGGATAATCCACCAACTGTGAAGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaattttactttcaagaattt-ttatgctgtggtatgtttgataataagcttatgatggtc-aaattaccag
| ||||| | || |||||  |||| ||||| || |||||||||||||| |  || |||||| |||| || ||||| |||||||| || |||||||||||||| |||||  ||      ||| |||  || | ||    | || ||||   | | ||||| |   || ||||||||||
GCTGAAATTATTTTGTGGCAAGGATTATCCAGACAATCCACCAACTGTTAGATTTCAGACTAGGATTAACATGACTTGTGTCAACCAAGAAACTGGAGTGgtaggtaacattttcacaaaggattccttgtact----tgtgattgaatttgaacttataaatatctaaattaccag

upper sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G35000.1 (Glycine max), 5'ss of exon 3
GTTGAAACTGTTCTGTGGTCAGGACTATCCGGATAATCCACCAACTGTGAAGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaat-tttactttcaagaatttttatgctgtggtatgtttgataataagcttatgatggtc-aaattaccag
| ||||| | || |||||  |||| ||||| || |||||||||||||| |  || |||||| |||| || ||||| |||||||| || |||||||||||||| |||||  ||| |  | | || |  || | ||    | || ||||   | | ||||| |   || ||||||||||
GCTGAAATTATTTTGTGGCAAGGATTATCCAGACAATCCACCAACTGTTAGATTTCAGACTAGGATTAACATGACTTGTGTCAACCAAGAAACTGGAGTGgtaggtaacattttcactaaggattccttgtact----tgtgattgaatttgaacttataaatatctaaattaccag

upper sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G23260.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGAAACTGTTCTGTGGTCAGGACTATCCGGATAATCCACCAACTGTGAAGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaattttactttcaagaat-ttttatgc-tgtg-gtatgtttgataataagcttatgatggtcaaattaccag---------------
| |||| || ||||||||| |||| || || || | |||||| ||||||| ||||||||| |||||||| ||| | ||||| || |  ||||||||||||||    |  |||    |||    | || |||   |||| || ||| ||   ||  |||||   ||  ||| ||                    
GCTGAAGCTTTTCTGTGGTAAGGAGTACCCTGAAAGTCCACCGACTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCCAGAAACTGGAGTGgtaataacctttgacatcactgctgttatatatgtgtgtgtgtgtgtggatatttgcttagtctga-caagttgtttcgaaatatgaaatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550762|gb|CF518980.1|CF518980
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|32249291|gb|CD715110.1|CD715110
EST:     AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|110399220|gb|EC965717.1|EC965717
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|161717210|gb|FC067216.1|FC067216
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|26266147|gb|CA817210.1|CA817210
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|37190155|gb|CF609504.1|CF609504
EST:     AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|34548114|gb|CF516346.1|CF516346
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|30137020|gb|CB922358.1|CB922358
EST:     AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|30298336|gb|CB975130.1|CB975130
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|46918982|gb|CN548311.1|CN548311
EST:     AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|349830853|gb|FQ418161.1|FQ418161
EST:     AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|46918733|gb|CN548062.1|CN548062
EST:     GTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: GTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|34361563|gb|CF403148.1|CF403148
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
EST: gi|34549812|gb|CF518044.1|CF518044
EST:     AGTTTCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTG                         GTCGAACCAAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA
genomic: AGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGgtgggtaatt ... aaattaccagGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACA