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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGgtgatttattagtttttgtgctcaacattctggtggagaatgatgatcattataataagatacattttatagattatttttgttggttattttgaatattttattttcttaatattttgcattttatgcaagcaaaaatcatataatctctgcaaacctcacttgttgaatatcttgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g05400.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G32790.1 (Glycine max), 5'ss of exon 2
TCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGgtgat---ttattagtttttgtgctcaacattctggtggagaatgatgatcattataa-taagatacattttatagattatttttgttggttattttgaa--tattttattttcttaatattttgcattttatg-caagcaaaaatcatataatctctgcaaacctcacttgttgaatatcttgcag
||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||| ||||||| |    || ||   ||| | | | |  ||   | |  || |  || ||  | || | ||   ||| ||| ||   |||   ||| ||||||  || |   ||  |  ||||  | | || |    | || || ||     | ||   ||| |  |  |||||   | |  |||||          
TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGgtaacaactttttttctttggagataattatcaggattcaggaaaat-attttgatgactaccttacctttgattctttaacattgctggttaactttagcctagatagttttaattaaatataagttgttttgacagttttagattgcatattaac--caaacaataatgattgaag---------

upper sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G14750.1 (Glycine max), 5'ss of exon 1
TCTTGAGAAAGGAGTTGAACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGgtgatttattagtttttgtgctcaacattctggtggagaatgatgatcattataataagatacattttatagattatttttgttggtta---ttttgaatattttattttcttaatattt-tgcattttatgcaagcaaaaatcatataatctctgcaaacctcacttgttgaatatcttgcag
  | || |||||||||||||||||| |||| ||||||||||||||||||||||| || ||| ||||||| ||  | |  |||| | | | | ||   |    || |||       ||| | || | |||| ||| ||    ||   ||| ||||||   |||| | ||  | |||||  ||| || | ||  ||||   ||     |  |   ||| |  |  ||| |     |  ||| |          
--TCGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGgtaatg-actttttttggagataatcaggattcaagaaaat-------attttgatga-atacctttgatgctataacattgctggttaaatttttcactagatgattttaataaaatatgtgtgtttttgacacttttaggttgcatattaac--caagcaatgatgattgtag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858441|gb|DT007496.1|DT007496
EST:     AACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAG                         GTGTCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACT
genomic: AACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGgtgatttatt ... tatcttgcagGTGTCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACT
EST: gi|294966476|gb|GW839583.1|GW839583
EST:     AACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAG                         GTGCCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACT
genomic: AACTGGATTACCAATGGGTTGAGTTTGATGATGTTCGCTACCATGTTCAGgtgatttatt ... tatcttgcagGTGTCAATGAAGTATCCACAATTCCTGCTGCTGTCAGTATCGTTACCCACT