1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaatccatcgcatttggtttccttctttaattttatcaaactaataactaatcaaatctttacctatgcag
species | Vitis vinifera |
transcript | Vv01s0011g04740.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTT GCCCGTTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGCGEST: gi|27579025|gb|CB001720.1|CB001720
genomic: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaa ... acctatgcagGCCCGTTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGCG
EST: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTT GCCCGTTGTTTTCCCAGTEST: gi|110702347|gb|EE080959.1|EE080959
genomic: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaa ... acctatgcagGCCCGTTGTTTTCCCAGT
EST: GTTCATAAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTT GCCCATTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAACCCAGTCGCGEST: gi|34549305|gb|CF517537.1|CF517537
genomic: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaa ... acctatgcagGCCCGTTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGCG
EST: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTT GCCCGTTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGGGEST: gi|110710246|gb|EE086413.1|EE086413
genomic: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaa ... acctatgcagGCCCGTTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGCG
EST: GTTCATAAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTT GCCCATTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGCG
genomic: GTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaa ... acctatgcagGCCCGTTGTTTTCCCAGTGACAATATCGAATAAAGCAGAAGCCCAGTCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAATAAGAAGATCCATAGAGATTATTACAACAGCAACCTTCTTgtaagcacaatccatcgcatttggtttccttctttaattttatcaaactaataactaatcaaatctttacctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG