Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCAAGTGGGGCTCTGGATCCGGAAAGTAGGTCATCTGGCAATCTTGTTACTTCTGTGAAAAGgtgtggccttgtctgtctgtgcaatactacttcattttagagaactttttagtattgatacacatcataaaattttggtacctcatgtgtattgtttccgatag

Basic information

species Vitis vinifera
transcript Vv01s0011g04370.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828936|gb|FQ419269.1|FQ419269
EST:     CTGGATCCGGAAAGTAGGTCATCTGGCAATCTTGTTACTTCTGTGAAAAG                         GGGTGTATGGGCGATGATTGCAGTCTTTTCTTGCTTACTGCTTGCTGCAAG
genomic: CTGGATCCGGAAAGTAGGTCATCTGGCAATCTTGTTACTTCTGTGAAAAGgtgtggcctt ... tttccgatagGGGTGTATGGGCGATGATTGCAGT-TTTTCTTGCTTACTGCTTGCTGCAAG
EST: gi|351026887|gb|FQ436540.1|FQ436540
EST:     CTGGATCCGGAAAGTAGGTCATCTGGCAATCTTGTTACTTCTGTGAAAAG                         GGGTGTATGGGCGATGATTGCAGTTTTTTCTTGCTTACTGCTTGCTGCAAG
genomic: CTGGATCCGGAAAGTAGGTCATCTGGCAATCTTGTTACTTCTGTGAAAAGgtgtggcctt ... tttccgatagGGGTGTATGGGCGATGATTGCAGTTTTT-CTTGCTTACTGCTTGCTGCAAG