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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGgttttcattgtttaatttttctgtgtcttctcctctctatacggttttggggcacttaaaatgtgggttgttctttcttcttttggagcaaacaaaattaagttgtacttctcattcatccag

Basic information

species Vitis vinifera
transcript Vv01s0011g03380.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G25860.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGgttttcattgttta--atttttctgtgtcttctcctctctatacggttttggggcacttaaaatgtgggttgttctttcttcttttggagcaaacaaaattaagttgtacttctcattcatccag
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TTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTGgtact-attcttaacgaattgtttagatgacaaacatgtgaagtgtgtttaaggattttgatttaagggatatatctatggaatgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29785993|gb|CB343386.2|CB343386
EST:     TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG                         GGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
genomic: TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGgttttcattg ... attcatccagGGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
EST: gi|110399056|gb|EC965543.1|EC965543
EST:     TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG                         GGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
genomic: TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGgttttcattg ... attcatccagGGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
EST: gi|26259444|gb|CA810507.1|CA810507
EST:     TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG                         GGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
genomic: TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGgttttcattg ... attcatccagGGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
EST: gi|77583069|gb|DV220571.1|DV220571
EST:     TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG                         GGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG
genomic: TGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAGgttttcattg ... attcatccagGGACCTTCACTCTGTCCAATTTGGGCATGTTTGGTGTAGACAGGTTTGATG