Sequence
atgc intronic sequence ATGC exonic sequenceCATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttccttagttgataacattaataaatgctattgtttgcacatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G896337_T01 (Zea mays), 5'ss of exon 2
CATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttcctta-gttgataacattaataaatgctattgtttgcacatgcag
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TGTGCTAGTCATGCTTTGTTGGATGGCATTATGGTCCTTTGGAATTTCTGGCATTGTTGCCTTTGGCATACCAAATGGTGGGCAATGGTGGCTTCTTTTGgtgagctggcaagtttttaccatacttctatatgaatatttagtgcctttattattcagatgttttttaaataacatcccttgtatttgcag-------------------------------
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G24760.1 (Glycine max), 5'ss of exon 3
CATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttccttagttgataacattaataaatgctattgtttgcacatgcag
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TATGTTTGTCGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCAGCGGGTGTTGTGGCTTCAAGCATGGGCGATGGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcatcctgtgttctagt-ttggactgtttttggcatca--gttt--actaaatcttcctcatctgattacactgata----ttgcaattcacgattgcag
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G42290.1 (Glycine max), 5'ss of exon 3
CATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttccttagttgataacattaataaatgctattgtttgcacatgcag
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TATGTTTGTCGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCAGCGGGTGTTGTGGCTTCAAGCATGGGTGATGGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctatctgttctt---gtttggattggttttgg-----catcagatttcta----aactttccacatctgattacactgata----ttgctattcatgcttgcag
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G21270.3 (Glycine max), 5'ss of exon 1
CATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttccttagt-tgataacattaataaatgctattgtttgcacatgcag
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TATGCTTGTTGTGCTTTTATGGATGGCCTTATGGTCATTTGGAGCTGCTGGTGTTGTGGCTTCAAGCATGGGTGACGGTGGACGCTGGTGGCTTCTAGTGgtgagctggcaagttttgctcttaattttgtctgtgcttgttggg--agttggaactggttatttatggctgcagattgtgtaatctgattacactgatat-tgtcatcattaacgcag----
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G25500.1 (Arabidopsis thaliana), 5'ss of exon 3
CATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgc-tcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttccttagttgataacattaataaatgctattgtttgcacatgcag
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CACAGTAGTCATGCTTTTGTGGATGTCTCTATGGTCTTTTGGAGCAGCTGGTGTTGTGGCATCGAGCATGGGCGATGAGGGACGATGGTGGCTTCTTGTGgtgagctggcaagttttgcatttttactcacggtttctgttttctgctttaagtgtctgaaag-------taaacatgtttagaattcactcaatcattggaacatataatat--atatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110362607|gb|EC926152.1|EC926152EST: GTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGT-GCTTCTTGTG GTGTTCTCGGTGAGCTTATTTTGGACAGGTGCAGTCCTTTGTAATACTGTA
genomic: GTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggc ... gcacatgcagGTGTTCTCGGTGAGCTTATTTTGGACAGGTGCAGTCCTTTGTAATACTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGCTGGTCATGCTTTTATGGATGGCAATATGGTCTTTTGGAGCATCAGGTGTTGTGGCTTCAAGTATAGGTGATAGTGGACGCTGGTGGCTTCTTGTGgtgagctggcaagttttgctcttcattccttctgttgttattgggccaagaagagcaggaaggttccggcagaactttccttagttgataacattaataaatgctattgtttgcacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG