1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAAGAGGAGGAACAAAGAACTTCAGCATGAAAAAAGAGAGCTACTAGTTAAGCTGGATGGTGCTGAAGCTAGAGTAGCAGCCCTCTCAAATATGACAGAGgtcagactcttatagttcaattgtgctcatttttatcttccattaatgtttctcttcctcttctatttttgttgggaaactttttaagttggcatctcac...
species | Vitis vinifera |
transcript | Vv01s0011g02860.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTGGATGGTGCTGAAGCTAGAGTAGCAGCCCTCTCAAATATGACAGAG AGTGAAATGGTCGCCAAGGCAAGAGAAGATGTGAATAATTTAAGACATGCAEST: gi|352768424|gb|FQ469600.1|FQ469600
genomic: AGCTGGATGGTGCTGAAGCTAGAGTAGCAGCCCTCTCAAATATGACAGAGgtcagactct ... gtatcttcagAGTGAAATGGTCGCCAAGGCAAGAGAAGATGTGAATAATTTAAGACATGCA
EST: AGCTGGATGGTGCTGAAGCTAGAGTAGCAGCCCTCTCAAATATGACAGAG AGTGAAATGGTCGCCAAGGCAAGAGAAGATGTGAATAATTTAAGACATGCA
genomic: AGCTGGATGGTGCTGAAGCTAGAGTAGCAGCCCTCTCAAATATGACAGAGgtcagactct ... gtatcttcagAGTGAAATGGTCGCCAAGGCAAGAGAAGATGTGAATAATTTAAGACATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGAGGAGGAACAAAGAACTTCAGCATGAAAAAAGAGAGCTACTAGTTAAGCTGGATGGTGCTGAAGCTAGAGTAGCAGCCCTCTCAAATATGACAGAGgtcagactcttatagttcaattgtgctcatttttatcttccattaatgtttctcttcctcttctatttttgttgggaaactttttaagttggcatctcac
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaac