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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g02820.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G11320.1 (Glycine max), 5'ss of exon 3
GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
||||| |||||||| ||||| || ||||| ||| |||| ||||   | ||||||||||| |||||||||||||||||| | |  ||          | || | |   | | | | ||  | || | ||    || || |||||     |||| | |||||||
GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaaat----------tgttgtctgaattaagaaccag-ttaaattaatcacatcct-aattatatgaaattgcatatgcag

upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G11300.2 (Glycine max), 5'ss of exon 3
GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
||||| |||||||| ||||| || ||||| ||| |||| ||||   | ||||||||||| |||||||||||||||||| | |  ||           ||||| |   | ||| ||||  | || | |||   || || |||||     |||| | |||||||
GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaaata----------tttatctgaattatgaatcag-ttaaattaaccacatcct-aattatatggaattgcatatgcag

upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA04G17050.1 (Glycine max), 5'ss of exon 3
GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
||||| |||||||| ||||| || ||||| ||| |||| ||||   | ||||||||||| |||||||||||||||||  | |            |||||||| |     ||| ||||  | || | ||    || || |||||     |||| | |||||||
GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggacgagaaa----------ttttttatctgaaatatgaatcag-ttaaattaatcacatcct-aattatatggaattgcatatgcag

upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G22680.3 (Glycine max), 5'ss of exon 3
GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
||||| |||||||| ||||| || || || ||| |||  ||||   | ||||||||||| |||||||||||||||||| | |   |          |||||| |     ||| ||||  | || | ||    || || |||||     |||| | |||||||
GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaagt----------ttttatctgaaatatgaatcag-ttaaattaatcacatcct-aattatatggaattgcatatgcag