Sequence
atgc intronic sequence ATGC exonic sequenceCAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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CAAGAAAGGAAAGGATAGCCTTTCTGCTCAGGGGAAGCGTCGTTATGACCGCAAGCAGTCAGGATATGGTGGGCAGACAAAGCCTGTTTTTCACAAGAAGgtttga---ccttgatttctctatgccttgcgaatttaaaggatagctactagcttgtttggtagtgttgcttctgtgtgtta-----atttacttacctctaatatttgttgtcattcag--------------------------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaa--tccatctatatccttatttccttggaaattttaaccctttttttaagttgtgt-gatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag---
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CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgcca-aattttcataacctttgattgcttttcacctaatcac-ctaatcag
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TAAGAAGGGCAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcagcatatctatttgattgtactt--atacctttgtctgttttgatgctagcatga-atgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaatgtgggatatgacaaatgagattgtatttatacctttcag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttt-----tctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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TAAGAAGGGCAAGGATAGCATGTCTGCCCAGGGAAAGCGTCGTTATGACCGCAAGCAGTCAGGACATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcaacatatctatttgattgtactt--atacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggata--tgacaaatgtgattgtattaatacctt--tcag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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CAAGAAGGGTAAAGATAGCATTGCTGCCCAAGGAAAACGCCGTTACGATCGCAAACAATCTGGTTATGGCGGACAAACTAAGCCCGTCTTCCACAAGAAGgtaacctctcgt---taacctaagtgcataggaattaggagtttttttcctgacaaa---aacatttttatttttaattg--attag------------------------------------------------------------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G05670.2 (Glycine max), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgta-acaatccatctatatccttatt--tccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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CAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGAAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGACAAACTAAGCCCGTCTTCCACAAGAAGgttcgttggttaaatatttcgttataagtgcataggaattaggatctttttttt---tttgctgacaaaaatat-----atttttatttaaaatag------------------------------------------------------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G24930.1 (Glycine max), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACCAAGCCCGTTTTCCACAAAAAGgta-caattctactgtttccccc---------aaacactgccttatggtttttattgc-taataatttacttttaattaattaattag-----------------------------------------------------------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G08030.1 (Glycine max), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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CAAGAAGGGCAAGGACAGCATCGCCGCTCAGGGAAAACGCCGTTATGACCGCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttcc-taatttacctttaattaattag------------------------------------------------------------------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgta-acaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctattt---atat-ttttatatgccaaattt-tca--taacctttgattgcttttcacctaatcacctaatcag
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TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatactcgcttttccttgtcttgatctct----aattactgtcttctatgtgagaaccaatttaggatt-tcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctt-tctttggaacag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatct-atatccttatttccttggaaattttaaccc--tttttttaagttgtgtgatacttttctcagagattgctatt--tatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag--------------------------
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CAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGgtaacattgattatcatgcattgattgttttttcagtttgaattaggtctagttagttgaaatgaggtagttttaaggaaccatttatagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 5'ss of exon 3
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattt-taaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
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--------------------------------GTAAGAGGAGATATGACAGGAAACAATCAGGATACGGAGGTCAGACCAAGCCTGTCTTCCACAAGAAGgta-tgttgcgt---aatcagcacctgatgaagcatgggcagttcactctcagaattttaggatg--tctcgtcaatcctgctatctcagtgtttgtgtttcgtgt------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34319843|gb|CF372597.1|CF372597EST: TGGAGGACAGACCAAACCTGTCTTCCACAAAAAG CCAAAAACCACCAAGAAGATAGTGCTGAGGTTGCAATGCCAGGGCTGCAAA
genomic: TGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatcc ... acctaatcagGCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGAAAGGAAAAGATAGCCTTGCAGCCCAGGGGAAACGCCGGTATGATCGGAAACAGTCAGGCTATGGAGGACAGACCAAACCTGTCTTCCACAAAAAGgtaacaatccatctatatccttatttccttggaaattttaaccctttttttaagttgtgtgatacttttctcagagattgctatttatatttttatatgccaaattttcataacctttgattgcttttcacctaatcacctaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA