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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggtataactttttggatgaatggcgtcctagcacttcat...

Basic information

species Vitis vinifera
transcript Vv01s0011g01960.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G850355_T08 (Zea mays), 5'ss of exon 3
CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggtataactttttggatgaatggcgtcctagcacttcat---
||||||| ||||| || ||||| |||||||||||||| |||||||| |||||||||||  |||| ||  ||  |       ||||||||||||   ||| | |||      |||| |  |||       |||| |  |   |   ||  |  | |   |  |  |   
CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCTgtatgtgtac------ctaagtttttga-attttctctatgccacattcttatctttctctatgataagtgct-aaacagatacctgcatgaaaacttttcag

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G824831_T03 (Zea mays), 5'ss of exon 4
CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggtataactttttggatgaatggcgtcct--agcacttcat--
||||||||||||| || ||||| ||||||||||| || |||||||| || ||||||||  |||| ||  ||  ||      ||||||||||||  |||| | | ||      |       |||||   |      |  |  |   ||  |  | |  |  ||||     
CTGCCAATGGTGTAGTCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat------ctaagtttttga--atttctcttttgccacattctgacctttctccatgacgagtgctaaacagatacctgcatgaaaaacttttcag

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G850355_T03 (Zea mays), 5'ss of exon 3
CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggtataactttttggatgaatggcgtcctagcacttcat--------
||||||| ||||| || ||||| || ||||||||||| |||||||| || ||||||||  |||| ||  ||  |       ||||||||||||   ||| | |||      |||| || |||       |||| |  |   |   ||  |  | |   |  |  |        
CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac------ctaagtttttga-attttctctatgccacattcttacctttctctatgataagtgct-aaacagatacctgcatgaaaacttttcaggtgca

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G850355_T02 (Zea mays), 5'ss of exon 4
CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggtataactttttggatgaatggcgtcctagcacttcat---
||||||| ||||| || ||||| || ||||||||||| |||||||| || ||||||||  |||| ||  ||  |       ||||||||||||   ||| | |||      |||| || |||       |||| |  |   |   ||  |  | |   |  |  |   
CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac------ctaagtttttga-attttctctatgccacattcttacctttctctatgataagtgct-aaacagatacctgcatgaaaacttttcag

upper sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 5'ss of exon 4
CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggta-taactttttggatgaatggcgtcctagcacttcat---------------------------------
|| | ||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||||| || || || |||   |  |  |||   ||| |    ||| ||   ||||  ||     | |  ||  | || |  | ||| || || || |  ||  || |  || |                                 
CTTCAAATGGAGTTGTCATTGCAACTGAAAAGAAACTTCCTTCTATATTGGTTGATGAAGCGTCTgtaagtt--tgatcaactc--tttatagcaattagttctttttcattctgtgcctgctcgtgttactttcctttcggttgcatagtttc--agtaactcctacgaaactaatgtttatctattgtctgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71865818|gb|DT014873.1|DT014873
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351024618|gb|FQ433033.1|FQ433033
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351049257|gb|FQ429000.1|FQ429000
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349824580|gb|FQ413247.1|FQ413247
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349823294|gb|FQ400273.1|FQ400273
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|161721034|gb|FC069643.1|FC069643
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351024239|gb|FQ423662.1|FQ423662
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GCCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|26262020|gb|CA813083.1|CA813083
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351055959|gb|FQ453420.1|FQ453420
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351043200|gb|FQ443921.1|FQ443921
EST:     TATTGCAACTGAGAAGAAACCTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TATTGCAACTGAGAAGAAAC-TACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349833395|gb|FQ420141.1|FQ420141
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|352786780|gb|FQ481155.1|FQ481155
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110732497|gb|EE107834.1|EE107834
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|294965519|gb|GW839090.1|GW839090
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAAGGTCTTGACACCAAATATCGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACA-GGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349828007|gb|FQ422875.1|FQ422875
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351033855|gb|FQ447893.1|FQ447893
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351031393|gb|FQ445418.1|FQ445418
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110709321|gb|EE084677.1|EE084677
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|18459130|gb|BM437408.1|BM437408
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|71874592|gb|DT023647.1|DT023647
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|161719842|gb|FC066700.1|FC066700
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351034587|gb|FQ457944.1|FQ457944
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351056934|gb|FQ443561.1|FQ443561
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|71874034|gb|DT023089.1|DT023089
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|71865594|gb|DT014649.1|DT014649
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351026121|gb|FQ428133.1|FQ428133
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110722035|gb|EE097915.1|EE097915
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|71875837|gb|DT024892.1|DT024892
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351025845|gb|FQ427857.1|FQ427857
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110723186|gb|EE100208.1|EE100208
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110720973|gb|EE097443.1|EE097443
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351015715|gb|FQ431670.1|FQ431670
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|161710621|gb|FC058154.1|FC058154
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351034033|gb|FQ447950.1|FQ447950
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGCTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349823750|gb|FQ415161.1|FQ415161
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349833047|gb|FQ416425.1|FQ416425
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|161716863|gb|FC064966.1|FC064966
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349829045|gb|FQ419577.1|FQ419577
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|37187366|gb|CF606719.1|CF606719
EST:     AGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: AGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349813035|gb|FQ411275.1|FQ411275
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351023525|gb|FQ432908.1|FQ432908
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349810102|gb|FQ401548.1|FQ401548
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351019336|gb|FQ429496.1|FQ429496
EST:     TTATTGCAACTGAGAAGAAACTACTTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349830442|gb|FQ416740.1|FQ416740
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351042546|gb|FQ431144.1|FQ431144
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|30254545|gb|CB971290.1|CB971290
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACGGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351024968|gb|FQ433385.1|FQ433385
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351018781|gb|FQ425683.1|FQ425683
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349822557|gb|FQ412832.1|FQ412832
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351030830|gb|FQ438866.1|FQ438866
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351029695|gb|FQ427535.1|FQ427535
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351014327|gb|FQ437329.1|FQ437329
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349820335|gb|FQ403951.1|FQ403951
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|27581848|gb|CB004543.1|CB004543
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349830137|gb|FQ420397.1|FQ420397
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349825798|gb|FQ423093.1|FQ423093
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351027537|gb|FQ446700.1|FQ446700
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110694632|gb|EE071906.1|EE071906
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351019358|gb|FQ429520.1|FQ429520
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351042920|gb|FQ451214.1|FQ451214
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351023803|gb|FQ448354.1|FQ448354
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351019037|gb|FQ426536.1|FQ426536
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110730033|gb|EE106653.1|EE106653
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGG-TTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349825869|gb|FQ423164.1|FQ423164
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351022594|gb|FQ447116.1|FQ447116
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110688210|gb|EE066498.1|EE066498
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349819242|gb|FQ412136.1|FQ412136
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351029919|gb|FQ427759.1|FQ427759
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351031360|gb|FQ445385.1|FQ445385
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351029955|gb|FQ430697.1|FQ430697
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351016627|gb|FQ424054.1|FQ424054
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351013410|gb|FQ425441.1|FQ425441
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349818674|gb|FQ403508.1|FQ403508
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|27579248|gb|CB001943.1|CB001943
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351040402|gb|FQ434535.1|FQ434535
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|349826813|gb|FQ418904.1|FQ418904
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351030254|gb|FQ432192.1|FQ432192
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110422225|gb|EC988540.1|EC988540
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATCCAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351016774|gb|FQ424201.1|FQ424201
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|110359904|gb|EC922217.1|EC922217
EST:     ATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
genomic: ATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG
EST: gi|351015657|gb|FQ427142.1|FQ427142
EST:     TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCG                         GTCCAAAAGATACAGGTTTTGACACCAAATATCGGAGTTGTCTACAG
genomic: TTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaat ... ttgatttcagGTCCAAAAGATACAGGTTTTGACACCAAATATTGGAGTTGTCTACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCCAATGGTGTTGTTATTGCAACTGAGAAGAAACTACCTTCTATCTTGGTGGATGAGGCATCGgtgagtcaattgtggactaagtttttgatgatttgtatatttttttttctcactttttctgggtataactttttggatgaatggcgtcctagcacttcat

- - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA